Detailed information
Bioinformatically predicted
Overview
| Name | ssbB/cilA | Type | Machinery gene |
| Locus tag | DEH83_RS05745 | Genome accession | NZ_CP029207 |
| Coordinates | 1122765..1123160 (+) | Length | 131 a.a. |
| NCBI ID | WP_003070740.1 | Uniprot ID | A0AAD2SVP3 |
| Organism | Streptococcus constellatus strain TCV107 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1117765..1128160
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DEH83_RS05715 (DEH83_05700) | - | 1118575..1119135 (+) | 561 | WP_006269984.1 | folate family ECF transporter S component | - |
| DEH83_RS05720 (DEH83_05705) | - | 1119511..1119843 (-) | 333 | WP_255776378.1 | HIRAN domain-containing protein | - |
| DEH83_RS10010 (DEH83_05710) | - | 1119861..1120141 (-) | 281 | Protein_1090 | hypothetical protein | - |
| DEH83_RS05725 (DEH83_05715) | pepA | 1120260..1121324 (-) | 1065 | WP_255777237.1 | glutamyl aminopeptidase | - |
| DEH83_RS05730 (DEH83_05720) | - | 1121444..1121731 (+) | 288 | WP_255776379.1 | DUF4651 domain-containing protein | - |
| DEH83_RS05735 (DEH83_05725) | - | 1121728..1122045 (+) | 318 | WP_003070744.1 | thioredoxin family protein | - |
| DEH83_RS05740 (DEH83_05730) | ytpR | 1122067..1122693 (+) | 627 | WP_048800667.1 | YtpR family tRNA-binding protein | - |
| DEH83_RS05745 (DEH83_05735) | ssbB/cilA | 1122765..1123160 (+) | 396 | WP_003070740.1 | single-stranded DNA-binding protein | Machinery gene |
| DEH83_RS05750 (DEH83_05740) | - | 1123461..1124447 (+) | 987 | WP_003070738.1 | sugar ABC transporter substrate-binding protein | - |
| DEH83_RS05755 (DEH83_05745) | - | 1124447..1125760 (+) | 1314 | WP_003070736.1 | sensor histidine kinase | - |
| DEH83_RS05760 (DEH83_05750) | - | 1125753..1126436 (+) | 684 | WP_049493510.1 | response regulator transcription factor | - |
| DEH83_RS05765 (DEH83_05755) | - | 1126433..1127719 (+) | 1287 | WP_048800669.1 | ABC transporter substrate-binding protein | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 14715.64 Da Isoelectric Point: 5.9381
>NTDB_id=291195 DEH83_RS05745 WP_003070740.1 1122765..1123160(+) (ssbB/cilA) [Streptococcus constellatus strain TCV107]
MYNKVILIGRLVNTPELNKTANDKSVARATLAVNRRYKGQNGEREADFVNVIVWGKLAETLASYATKGSLISLDGELRTR
RYEKDGVTHYVTEVLCNGFQLLESRAQRALRENNTGADLADLVLEEEELPF
MYNKVILIGRLVNTPELNKTANDKSVARATLAVNRRYKGQNGEREADFVNVIVWGKLAETLASYATKGSLISLDGELRTR
RYEKDGVTHYVTEVLCNGFQLLESRAQRALRENNTGADLADLVLEEEELPF
Nucleotide
Download Length: 396 bp
>NTDB_id=291195 DEH83_RS05745 WP_003070740.1 1122765..1123160(+) (ssbB/cilA) [Streptococcus constellatus strain TCV107]
ATGTATAATAAAGTAATTTTAATTGGCCGCTTGGTTAATACACCAGAGTTAAATAAAACAGCTAATGATAAATCTGTGGC
GCGTGCAACGCTTGCTGTTAATCGCCGATATAAAGGACAAAATGGCGAGCGAGAAGCGGATTTTGTAAACGTCATTGTTT
GGGGCAAATTAGCCGAAACCTTAGCAAGTTATGCAACAAAAGGAAGCTTAATTTCTCTTGATGGAGAACTTCGTACTCGC
CGTTATGAGAAAGACGGTGTGACACATTATGTAACAGAAGTGCTTTGCAACGGCTTCCAGTTATTAGAAAGTCGTGCCCA
ACGAGCTCTTCGTGAGAATAATACAGGTGCAGACTTGGCAGATTTGGTTCTAGAAGAAGAGGAATTGCCGTTTTAA
ATGTATAATAAAGTAATTTTAATTGGCCGCTTGGTTAATACACCAGAGTTAAATAAAACAGCTAATGATAAATCTGTGGC
GCGTGCAACGCTTGCTGTTAATCGCCGATATAAAGGACAAAATGGCGAGCGAGAAGCGGATTTTGTAAACGTCATTGTTT
GGGGCAAATTAGCCGAAACCTTAGCAAGTTATGCAACAAAAGGAAGCTTAATTTCTCTTGATGGAGAACTTCGTACTCGC
CGTTATGAGAAAGACGGTGTGACACATTATGTAACAGAAGTGCTTTGCAACGGCTTCCAGTTATTAGAAAGTCGTGCCCA
ACGAGCTCTTCGTGAGAATAATACAGGTGCAGACTTGGCAGATTTGGTTCTAGAAGAAGAGGAATTGCCGTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
83.969 |
100 |
0.84 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
83.206 |
100 |
0.832 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
83.206 |
100 |
0.832 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
83.206 |
100 |
0.832 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
83.206 |
100 |
0.832 |
| ssbB/cilA | Streptococcus mitis SK321 |
83.206 |
100 |
0.832 |
| ssbA | Streptococcus mutans UA159 |
79.389 |
100 |
0.794 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
75.573 |
100 |
0.756 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
62.5 |
85.496 |
0.534 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
49.057 |
80.916 |
0.397 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
45.133 |
86.26 |
0.389 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
45.37 |
82.443 |
0.374 |