Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   SGO_RS09315 Genome accession   NC_009785
Coordinates   1975587..1975982 (+) Length   131 a.a.
NCBI ID   WP_012130920.1    Uniprot ID   A0AAQ4J6T1
Organism   Streptococcus gordonii str. Challis substr. CH1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1970587..1980982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGO_RS09290 (SGO_1897) - 1971798..1972751 (-) 954 WP_012130915.1 sugar ABC transporter substrate-binding protein -
  SGO_RS09295 (SGO_1898) pepA 1973033..1974100 (-) 1068 WP_012130916.1 glutamyl aminopeptidase -
  SGO_RS09300 (SGO_1899) - 1974280..1974567 (+) 288 WP_012130917.1 DUF4651 domain-containing protein -
  SGO_RS09305 (SGO_1900) - 1974564..1974881 (+) 318 WP_012130918.1 thioredoxin family protein -
  SGO_RS09310 (SGO_1901) ytpR 1974898..1975524 (+) 627 WP_012130919.1 YtpR family tRNA-binding protein -
  SGO_RS09315 (SGO_1902) ssbB/cilA 1975587..1975982 (+) 396 WP_012130920.1 single-stranded DNA-binding protein Machinery gene
  SGO_RS09320 (SGO_1903) - 1976161..1977645 (+) 1485 WP_041789909.1 DUF1846 domain-containing protein -
  SGO_RS09325 (SGO_1904) - 1977699..1978133 (-) 435 WP_012130922.1 hypothetical protein -
  SGO_RS10985 (SGO_1905) - 1978143..1978307 (-) 165 WP_012130923.1 hypothetical protein -
  SGO_RS09330 (SGO_1906) - 1978304..1978507 (-) 204 WP_012130924.1 helix-turn-helix transcriptional regulator -
  SGO_RS09335 (SGO_1907) - 1978804..1979841 (-) 1038 WP_012130925.1 sensor histidine kinase -
  SGO_RS09340 (SGO_1908) - 1979808..1980506 (-) 699 WP_012130926.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14766.59 Da        Isoelectric Point: 6.2466

>NTDB_id=29099 SGO_RS09315 WP_012130920.1 1975587..1975982(+) (ssbB/cilA) [Streptococcus gordonii str. Challis substr. CH1]
MYNKVIIIGRLTATPELHKTSNEKSVTRATIAVNRRYKDQNGEREADFINIVLWGKSAETLASYASKGSLISLDGELRTR
RYEKDGVTHYVTEVLGHGFQLLESRAQRAIRENNSGADLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=29099 SGO_RS09315 WP_012130920.1 1975587..1975982(+) (ssbB/cilA) [Streptococcus gordonii str. Challis substr. CH1]
ATGTACAATAAAGTCATTATTATCGGTCGTTTGACGGCCACACCAGAATTGCACAAAACTAGCAATGAAAAATCTGTCAC
ACGCGCAACGATTGCTGTCAACCGCCGTTACAAGGATCAAAATGGTGAGCGCGAAGCAGACTTCATTAATATCGTCCTTT
GGGGCAAATCAGCTGAGACTCTAGCTAGTTATGCCAGCAAAGGAAGCTTAATTTCTCTGGACGGCGAATTACGGACCCGT
CGTTATGAGAAAGATGGCGTAACTCACTATGTCACAGAAGTGCTTGGTCATGGTTTCCAACTTCTTGAAAGTCGTGCCCA
GCGGGCTATTCGTGAAAATAATTCTGGGGCTGATTTAGCTGATCTAGTCTTGGAAGAAGAGGAACTTCCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus mitis NCTC 12261

83.969

100

0.84
  ssbB/cilA Streptococcus pneumoniae Rx1

83.969

100

0.84
  ssbB/cilA Streptococcus pneumoniae D39

83.969

100

0.84
  ssbB/cilA Streptococcus pneumoniae R6

83.969

100

0.84
  ssbB/cilA Streptococcus pneumoniae TIGR4

83.969

100

0.84
  ssbB/cilA Streptococcus mitis SK321

83.206

100

0.832
  ssbA Streptococcus mutans UA159

80.153

100

0.802
  ssbB Streptococcus sobrinus strain NIDR 6715-7

74.046

100

0.74
  ssbB Lactococcus lactis subsp. cremoris KW2

63.393

85.496

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

50.943

80.916

0.412
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.057

80.916

0.397
  ssbB Bacillus subtilis subsp. subtilis str. 168

44.444

82.443

0.366

Multiple sequence alignment