Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   DDT09_RS13325 Genome accession   NZ_CP029070
Coordinates   2709410..2710162 (-) Length   250 a.a.
NCBI ID   WP_014418548.1    Uniprot ID   I2C8I4
Organism   Bacillus amyloliquefaciens strain ALB69     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2704410..2715162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDT09_RS13300 (DDT09_13300) mreC 2704846..2705709 (-) 864 WP_007408166.1 rod shape-determining protein MreC -
  DDT09_RS13305 (DDT09_13305) mreB 2705740..2706753 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  DDT09_RS13310 (DDT09_13310) radC 2706845..2707540 (-) 696 WP_061862440.1 DNA repair protein RadC -
  DDT09_RS13315 (DDT09_13315) - 2707572..2708141 (-) 570 WP_061862441.1 Maf family protein -
  DDT09_RS13320 (DDT09_13320) - 2708282..2709283 (-) 1002 WP_014418547.1 SPOR domain-containing protein -
  DDT09_RS13325 (DDT09_13325) comC 2709410..2710162 (-) 753 WP_014418548.1 A24 family peptidase Machinery gene
  DDT09_RS13330 (DDT09_13330) - 2710302..2711594 (-) 1293 WP_014418549.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  DDT09_RS13335 (DDT09_13335) - 2711653..2714295 (-) 2643 WP_014418550.1 valine--tRNA ligase -
  DDT09_RS13340 (DDT09_13340) - 2714748..2714939 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27261.96 Da        Isoelectric Point: 9.4293

>NTDB_id=289976 DDT09_RS13325 WP_014418548.1 2709410..2710162(-) (comC) [Bacillus amyloliquefaciens strain ALB69]
MLLFLFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTVTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDTWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLPLGVKLVLIAFFLSVMIGTVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=289976 DDT09_RS13325 WP_014418548.1 2709410..2710162(-) (comC) [Bacillus amyloliquefaciens strain ALB69]
GTGCTTTTGTTTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTTCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACCGTGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTCATTGCCG
GCCGTATGTTTTCTCCGCTGGATACATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGCCGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAACCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGAGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGAGCTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C8I4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.065

99.2

0.576

Multiple sequence alignment