Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   DBK22_RS12820 Genome accession   NZ_CP028961
Coordinates   2602882..2603223 (-) Length   113 a.a.
NCBI ID   WP_160242370.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM102752     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2597882..2608223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBK22_RS12805 (DBK22_02576) - 2598150..2600924 (+) 2775 WP_007407554.1 DEAD/DEAH box helicase -
  DBK22_RS12810 (DBK22_02577) - 2601037..2601894 (-) 858 WP_032867429.1 Cof-type HAD-IIB family hydrolase -
  DBK22_RS12815 (DBK22_02578) - 2601891..2602673 (-) 783 WP_003151250.1 DeoR/GlpR family DNA-binding transcription regulator -
  DBK22_RS12820 (DBK22_02579) ssbB 2602882..2603223 (-) 342 WP_160242370.1 single-stranded DNA-binding protein Machinery gene
  DBK22_RS12825 (DBK22_02580) - 2603321..2603674 (-) 354 WP_003151247.1 hypothetical protein -
  DBK22_RS12830 (DBK22_02581) - 2603847..2604257 (+) 411 WP_012118638.1 YwpF-like family protein -
  DBK22_RS12835 (DBK22_02582) mscL 2604305..2604700 (-) 396 WP_003151243.1 large conductance mechanosensitive channel protein MscL -
  DBK22_RS12840 (DBK22_02583) fabZ 2604756..2605181 (-) 426 WP_003151242.1 3-hydroxyacyl-ACP dehydratase FabZ -
  DBK22_RS12845 (DBK22_02584) - 2605377..2606441 (+) 1065 WP_007407559.1 tetratricopeptide repeat protein -
  DBK22_RS12850 (DBK22_02585) - 2606459..2607280 (-) 822 WP_012118640.1 flagellar hook-basal body protein -
  DBK22_RS12855 (DBK22_02586) - 2607305..2608102 (-) 798 WP_007614310.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12631.50 Da        Isoelectric Point: 9.5812

>NTDB_id=289010 DBK22_RS12820 WP_160242370.1 2602882..2603223(-) (ssbB) [Bacillus velezensis strain SRCM102752]
MFNHVMLVGRLTKDPDLRFTAAGIPVAHITLAVNRNFKSASGETGTDFVNCTIWRKNAENTALYCQKGSMVGVSGRIQTR
SYEKTDGVKVYVTEVMADTVRFMDQKRKEPLAE

Nucleotide


Download         Length: 342 bp        

>NTDB_id=289010 DBK22_RS12820 WP_160242370.1 2602882..2603223(-) (ssbB) [Bacillus velezensis strain SRCM102752]
TTGTTTAACCACGTTATGCTTGTCGGCCGGCTGACGAAAGACCCGGATCTCCGTTTTACAGCAGCGGGCATTCCCGTCGC
GCATATTACGTTGGCGGTAAACCGCAATTTTAAAAGCGCGTCGGGTGAAACCGGAACCGACTTCGTCAACTGTACCATCT
GGAGAAAAAACGCTGAAAACACGGCATTGTACTGCCAAAAAGGGTCAATGGTCGGTGTAAGCGGCAGAATCCAGACGAGA
AGCTATGAAAAGACAGACGGCGTAAAAGTTTATGTGACCGAGGTCATGGCTGATACCGTTCGGTTTATGGATCAAAAACG
GAAAGAGCCGCTGGCTGAATAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

76.991

100

0.77
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.604

93.805

0.531
  ssb Latilactobacillus sakei subsp. sakei 23K

52.83

93.805

0.496
  ssbB Streptococcus sobrinus strain NIDR 6715-7

46.018

100

0.46
  ssbA Streptococcus mutans UA159

41.593

100

0.416
  ssbB/cilA Streptococcus mitis NCTC 12261

40.708

100

0.407
  ssbB/cilA Streptococcus pneumoniae TIGR4

40.708

100

0.407
  ssbB/cilA Streptococcus pneumoniae Rx1

39.823

100

0.398
  ssbB/cilA Streptococcus pneumoniae D39

39.823

100

0.398
  ssbB/cilA Streptococcus pneumoniae R6

39.823

100

0.398
  ssbB/cilA Streptococcus mitis SK321

39.823

100

0.398
  ssbB Lactococcus lactis subsp. cremoris KW2

36.607

99.115

0.363

Multiple sequence alignment