Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   FORC085_RS10840 Genome accession   NZ_CP028516
Coordinates   2135699..2136034 (+) Length   111 a.a.
NCBI ID   WP_000982019.1    Uniprot ID   A0A9X5UY69
Organism   Bacillus cereus strain 1000305     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2130699..2141034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC085_RS10815 (FORC085_2121) - 2130894..2131721 (-) 828 WP_025709741.1 hypothetical protein -
  FORC085_RS10820 (FORC085_2123) - 2131831..2132478 (+) 648 WP_000165965.1 HD domain-containing protein -
  FORC085_RS10825 (FORC085_2124) - 2132475..2134370 (+) 1896 WP_000783169.1 ABC-F family ATP-binding cassette domain-containing protein -
  FORC085_RS10830 (FORC085_2125) - 2134446..2135177 (+) 732 WP_001260655.1 Bax inhibitor-1/YccA family protein -
  FORC085_RS10835 (FORC085_2126) - 2135283..2135537 (+) 255 WP_000975137.1 DUF4318 domain-containing protein -
  FORC085_RS10840 (FORC085_2127) ssbA 2135699..2136034 (+) 336 WP_000982019.1 single-stranded DNA-binding protein Machinery gene
  FORC085_RS10845 (FORC085_2128) - 2136580..2137707 (+) 1128 WP_000692566.1 virulence factor -
  FORC085_RS10850 (FORC085_2129) - 2137711..2138094 (+) 384 WP_000634884.1 DCC1-like thiol-disulfide oxidoreductase family protein -
  FORC085_RS10855 (FORC085_2130) - 2138178..2138612 (+) 435 WP_000063706.1 BrxA/BrxB family bacilliredoxin -
  FORC085_RS10860 (FORC085_2131) - 2138662..2139438 (+) 777 WP_000637459.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12770.63 Da        Isoelectric Point: 9.7036

>NTDB_id=285358 FORC085_RS10840 WP_000982019.1 2135699..2136034(+) (ssbA) [Bacillus cereus strain 1000305]
MMNRVVLIGRLTKEPELYYTKQGVAYARICVAVNRGFRNSLGEQQVDFINCVVWRKSAENVTEYCKKGSLVGITGRIQTS
NYDNEQGKRIYRTEVVIESITFLERRREGAS

Nucleotide


Download         Length: 336 bp        

>NTDB_id=285358 FORC085_RS10840 WP_000982019.1 2135699..2136034(+) (ssbA) [Bacillus cereus strain 1000305]
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAACAAGGCGTCGCTTATGC
ACGAATATGTGTTGCGGTGAATAGAGGATTTCGAAATAGTTTAGGTGAACAACAAGTCGATTTTATTAATTGTGTCGTTT
GGCGCAAATCGGCTGAGAATGTAACTGAATATTGTAAAAAGGGATCACTCGTTGGGATTACAGGGCGTATTCAGACTAGT
AATTACGATAATGAACAAGGCAAGAGAATATATAGAACTGAAGTTGTGATTGAGAGTATTACCTTTTTGGAGAGAAGGCG
GGAGGGGGCATCGTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.434

95.495

0.568
  ssb Latilactobacillus sakei subsp. sakei 23K

56.604

95.495

0.541
  ssbB Bacillus subtilis subsp. subtilis str. 168

51.786

100

0.523
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.636

99.099

0.432
  ssbB Lactococcus lactis subsp. cremoris KW2

44.762

94.595

0.423
  ssbA Streptococcus mutans UA159

40

99.099

0.396
  ssbB/cilA Streptococcus mitis NCTC 12261

40

99.099

0.396
  ssbB/cilA Streptococcus pneumoniae TIGR4

40

99.099

0.396
  ssbB/cilA Streptococcus pneumoniae D39

39.091

99.099

0.387
  ssbB/cilA Streptococcus pneumoniae R6

39.091

99.099

0.387
  ssbB/cilA Streptococcus mitis SK321

39.091

99.099

0.387
  ssbB/cilA Streptococcus pneumoniae Rx1

39.091

99.099

0.387

Multiple sequence alignment