Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | DA377_RS03315 | Genome accession | NZ_CP028439 |
| Coordinates | 616164..616505 (+) | Length | 113 a.a. |
| NCBI ID | WP_003151249.1 | Uniprot ID | A0A9Q3LHX6 |
| Organism | Bacillus velezensis strain 8-2 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 611164..621505
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DA377_RS03280 | - | 611286..612083 (+) | 798 | WP_003151238.1 | flagellar hook-basal body protein | - |
| DA377_RS03285 | - | 612108..612929 (+) | 822 | WP_003151239.1 | flagellar hook-basal body protein | - |
| DA377_RS03290 | - | 612947..614011 (-) | 1065 | WP_003151240.1 | tetratricopeptide repeat protein | - |
| DA377_RS03295 | fabZ | 614207..614632 (+) | 426 | WP_003151242.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| DA377_RS03300 | mscL | 614689..615084 (+) | 396 | WP_003151243.1 | large conductance mechanosensitive channel protein MscL | - |
| DA377_RS03305 | - | 615130..615540 (-) | 411 | WP_003151245.1 | YwpF-like family protein | - |
| DA377_RS03310 | - | 615713..616066 (+) | 354 | WP_003151247.1 | hypothetical protein | - |
| DA377_RS03315 | ssbB | 616164..616505 (+) | 342 | WP_003151249.1 | single-stranded DNA-binding protein | Machinery gene |
| DA377_RS03320 | - | 616716..617498 (+) | 783 | WP_003151250.1 | DeoR/GlpR family DNA-binding transcription regulator | - |
| DA377_RS03325 | - | 617495..618352 (+) | 858 | WP_003151252.1 | Cof-type HAD-IIB family hydrolase | - |
| DA377_RS03330 | - | 618465..621239 (-) | 2775 | WP_003151255.1 | DEAD/DEAH box helicase | - |
Sequence
Protein
Download Length: 113 a.a. Molecular weight: 12661.53 Da Isoelectric Point: 9.5812
>NTDB_id=284904 DA377_RS03315 WP_003151249.1 616164..616505(+) (ssbB) [Bacillus velezensis strain 8-2]
MFNHVMLVGRLTKDPELRFTSAGIPVAHITLAVNRNFKSASGETGTDFVNCTIWRKNAENTALYCQKGSMVGVSGRIQTR
SYEKTDGVKVYVTEVMADTVRFMDQKRKEPLAE
MFNHVMLVGRLTKDPELRFTSAGIPVAHITLAVNRNFKSASGETGTDFVNCTIWRKNAENTALYCQKGSMVGVSGRIQTR
SYEKTDGVKVYVTEVMADTVRFMDQKRKEPLAE
Nucleotide
Download Length: 342 bp
>NTDB_id=284904 DA377_RS03315 WP_003151249.1 616164..616505(+) (ssbB) [Bacillus velezensis strain 8-2]
TTGTTTAACCACGTTATGCTTGTCGGCCGGCTGACGAAAGACCCGGAGCTCCGTTTTACATCAGCGGGCATTCCCGTCGC
TCATATTACGTTGGCGGTAAACCGCAATTTTAAAAGCGCGTCGGGTGAAACCGGAACCGACTTTGTCAACTGCACCATCT
GGAGGAAAAACGCTGAAAACACGGCATTGTACTGCCAAAAAGGGTCAATGGTCGGTGTAAGCGGCAGAATCCAGACGAGA
AGCTATGAAAAGACAGACGGCGTAAAAGTTTATGTGACCGAGGTCATGGCTGATACCGTTCGGTTTATGGATCAAAAACG
GAAAGAGCCGCTGGCTGAATAG
TTGTTTAACCACGTTATGCTTGTCGGCCGGCTGACGAAAGACCCGGAGCTCCGTTTTACATCAGCGGGCATTCCCGTCGC
TCATATTACGTTGGCGGTAAACCGCAATTTTAAAAGCGCGTCGGGTGAAACCGGAACCGACTTTGTCAACTGCACCATCT
GGAGGAAAAACGCTGAAAACACGGCATTGTACTGCCAAAAAGGGTCAATGGTCGGTGTAAGCGGCAGAATCCAGACGAGA
AGCTATGAAAAGACAGACGGCGTAAAAGTTTATGTGACCGAGGTCATGGCTGATACCGTTCGGTTTATGGATCAAAAACG
GAAAGAGCCGCTGGCTGAATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
76.991 |
100 |
0.77 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
57.547 |
93.805 |
0.54 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
52.83 |
93.805 |
0.496 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
46.903 |
100 |
0.469 |
| ssbA | Streptococcus mutans UA159 |
42.478 |
100 |
0.425 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
41.593 |
100 |
0.416 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
41.593 |
100 |
0.416 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
40.708 |
100 |
0.407 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
40.708 |
100 |
0.407 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
40.708 |
100 |
0.407 |
| ssbB/cilA | Streptococcus mitis SK321 |
40.708 |
100 |
0.407 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
37.5 |
99.115 |
0.372 |