Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   C9I44_RS02900 Genome accession   NZ_CP028386
Coordinates   553801..554805 (+) Length   334 a.a.
NCBI ID   WP_004258982.1    Uniprot ID   -
Organism   Lactococcus garvieae strain IBB3403     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 548801..559805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9I44_RS02880 (C9I44_02850) - 549188..549892 (+) 705 WP_004258993.1 Bax inhibitor-1/YccA family protein -
  C9I44_RS02885 (C9I44_02855) - 549946..550770 (-) 825 WP_004258989.1 Cof-type HAD-IIB family hydrolase -
  C9I44_RS02890 (C9I44_02860) - 551127..552548 (+) 1422 WP_014024380.1 NCS2 family permease -
  C9I44_RS02895 (C9I44_02865) - 552625..553725 (+) 1101 WP_004258984.1 YdcF family protein -
  C9I44_RS02900 (C9I44_02870) coiA 553801..554805 (+) 1005 WP_004258982.1 competence protein CoiA Machinery gene
  C9I44_RS02905 (C9I44_02875) pepF 554789..556594 (+) 1806 WP_004258979.1 oligoendopeptidase F Regulator
  C9I44_RS02910 (C9I44_02880) - 556594..557277 (+) 684 WP_004258974.1 O-methyltransferase -
  C9I44_RS02915 (C9I44_02885) - 557375..558283 (+) 909 WP_017370843.1 peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 39839.73 Da        Isoelectric Point: 8.3685

>NTDB_id=284571 C9I44_RS02900 WP_004258982.1 553801..554805(+) (coiA) [Lactococcus garvieae strain IBB3403]
MLIALDKDGKTINLLDSTSINGPFYCPACKTALRLKKGKIKIPHFAHVSLQNCDSWSENESAQHLGLKLSLYQWFKEKEK
VELEKYVPEIKQTADLLVNDKLAIEIQCSPLSLQRLEERTVSYKEMGYYVLWLQGKDLWLKNTLSPLQKNLLYYSAERGF
YFWELDWNRKKLRLKSLIYQDLKGRPIYLTEEFDFFQESLLDLLRQPFRKGKNLSLDVPKQEELQLFVQKQLYYQVPKWL
KVQEKYYEQGRNLLDLNWKKSYWSPPGLNLLTFDFADDTRESFFQVDISLEKYYHSFYESFQLQEHETLHTPSFYAIIKD
KNKVENGEWNGKKT

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=284571 C9I44_RS02900 WP_004258982.1 553801..554805(+) (coiA) [Lactococcus garvieae strain IBB3403]
ATGTTAATAGCTTTGGATAAAGACGGAAAAACAATTAATCTTCTTGACAGCACTTCAATTAATGGCCCTTTTTATTGCCC
CGCCTGTAAGACGGCCCTTCGTTTAAAAAAAGGGAAGATAAAAATTCCTCACTTTGCCCATGTATCCTTACAAAATTGTG
ACTCTTGGAGTGAAAATGAATCTGCACAACACTTAGGCTTAAAACTCAGCTTATATCAGTGGTTTAAGGAAAAAGAGAAA
GTAGAGCTGGAAAAGTACGTGCCAGAGATTAAGCAAACGGCTGATTTGTTAGTGAATGATAAACTTGCTATTGAAATACA
GTGCTCGCCCCTCTCTTTGCAACGCTTAGAAGAGAGAACGGTCAGTTACAAAGAAATGGGATATTATGTACTTTGGCTTC
AAGGGAAGGACTTGTGGCTTAAAAATACTCTATCTCCTTTGCAGAAAAATTTGCTTTATTATTCAGCAGAGAGAGGTTTT
TATTTTTGGGAATTGGACTGGAACAGAAAGAAACTACGTTTGAAATCATTGATTTATCAAGATTTGAAAGGACGACCGAT
TTATCTAACGGAAGAGTTTGACTTCTTTCAAGAAAGTCTCTTAGACCTCTTACGCCAGCCCTTTCGAAAAGGAAAAAATC
TGAGTTTAGATGTGCCAAAGCAAGAAGAGTTACAGTTGTTTGTTCAGAAACAATTGTATTATCAAGTGCCAAAATGGCTT
AAAGTGCAAGAAAAATATTATGAACAAGGAAGAAATTTGCTGGACCTTAACTGGAAGAAGAGTTACTGGAGTCCTCCGGG
CTTGAACTTGTTGACCTTTGACTTTGCCGATGATACGCGAGAAAGCTTTTTTCAAGTAGACATTTCCTTGGAAAAATATT
ACCACAGTTTCTACGAAAGTTTTCAGTTACAAGAACATGAAACACTGCATACACCAAGCTTCTATGCTATAATTAAAGAT
AAAAATAAAGTGGAAAACGGGGAATGGAATGGCAAAAAAACGTGA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

52.147

97.605

0.509
  coiA Streptococcus pneumoniae Rx1

41.463

98.204

0.407
  coiA Streptococcus pneumoniae D39

41.463

98.204

0.407
  coiA Streptococcus pneumoniae R6

41.463

98.204

0.407
  coiA Streptococcus pneumoniae TIGR4

41.159

98.204

0.404
  coiA Streptococcus mitis NCTC 12261

41.159

98.204

0.404

Multiple sequence alignment