Detailed information
Bioinformatically predicted
Overview
| Name | pepF | Type | Regulator |
| Locus tag | C9I44_RS02905 | Genome accession | NZ_CP028386 |
| Coordinates | 554789..556594 (+) | Length | 601 a.a. |
| NCBI ID | WP_004258979.1 | Uniprot ID | - |
| Organism | Lactococcus garvieae strain IBB3403 | ||
| Function | degradation of XIP; competence shut-off (predicted from homology) Competence regulation |
||
Genomic Context
Location: 549789..561594
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C9I44_RS02885 (C9I44_02855) | - | 549946..550770 (-) | 825 | WP_004258989.1 | Cof-type HAD-IIB family hydrolase | - |
| C9I44_RS02890 (C9I44_02860) | - | 551127..552548 (+) | 1422 | WP_014024380.1 | NCS2 family permease | - |
| C9I44_RS02895 (C9I44_02865) | - | 552625..553725 (+) | 1101 | WP_004258984.1 | YdcF family protein | - |
| C9I44_RS02900 (C9I44_02870) | coiA | 553801..554805 (+) | 1005 | WP_004258982.1 | competence protein CoiA | Machinery gene |
| C9I44_RS02905 (C9I44_02875) | pepF | 554789..556594 (+) | 1806 | WP_004258979.1 | oligoendopeptidase F | Regulator |
| C9I44_RS02910 (C9I44_02880) | - | 556594..557277 (+) | 684 | WP_004258974.1 | O-methyltransferase | - |
| C9I44_RS02915 (C9I44_02885) | - | 557375..558283 (+) | 909 | WP_017370843.1 | peptidyl-prolyl cis-trans isomerase | - |
| C9I44_RS02920 (C9I44_02890) | alaS | 558534..561152 (+) | 2619 | WP_004258965.1 | alanine--tRNA ligase | - |
| C9I44_RS02925 (C9I44_02895) | - | 561294..561491 (-) | 198 | WP_017370844.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 601 a.a. Molecular weight: 69831.39 Da Isoelectric Point: 4.7087
>NTDB_id=284572 C9I44_RS02905 WP_004258979.1 554789..556594(+) (pepF) [Lactococcus garvieae strain IBB3403]
MAKKRDEIAENLTWDLSTVFENDAAWELELKRVSEKLETVNAYEGHLLDSAQSLLEITEMELEISRAVEKVYVYASMKHD
QDTQVSLYQEYEAKATNLYAKFGESFAFYEPEFLALTPERYESFRREEPKLEHYSHMFERLFAKKEHILSPKEEKLLASA
SEIFGAAAETFEIFDNADIELPMIKDEKGQEVQLTHGNYISLMESKERKVRKAAYQALYSNYEQYQHTYAKTLQTNVKVH
NFKAKMRGYHSARQAALSSNFIPEEVYDKLLESVNKYLPLLHRYIKLREQILGLEDDLKMYDVYTPLSDLDYKFNYPEAV
EKAQEVLQILGPEYAHHVKKAFEERWIDVAENSGKRSGAYSGGCYDTNAFMLLNWQETLDDLFTLVHEMGHSMHSTFTRE
NQPYVYGDYPIFLAEIASTTNENILTESLLAASTDEKVRFAILNHWLDGFRGTVFRQSQFAEFEHEIHKADQEGKVLTSE
FMNQLYAELNEKYYGLPARENPEIQYEWARIPHFYYNYYVFQYATGFAAATYLAEDIVNGGTDAREKYLTYLKAGSSDYP
LAVIAQAGVDMEETTYLESAFAVFEKRLIELEKLVEKGAHL
MAKKRDEIAENLTWDLSTVFENDAAWELELKRVSEKLETVNAYEGHLLDSAQSLLEITEMELEISRAVEKVYVYASMKHD
QDTQVSLYQEYEAKATNLYAKFGESFAFYEPEFLALTPERYESFRREEPKLEHYSHMFERLFAKKEHILSPKEEKLLASA
SEIFGAAAETFEIFDNADIELPMIKDEKGQEVQLTHGNYISLMESKERKVRKAAYQALYSNYEQYQHTYAKTLQTNVKVH
NFKAKMRGYHSARQAALSSNFIPEEVYDKLLESVNKYLPLLHRYIKLREQILGLEDDLKMYDVYTPLSDLDYKFNYPEAV
EKAQEVLQILGPEYAHHVKKAFEERWIDVAENSGKRSGAYSGGCYDTNAFMLLNWQETLDDLFTLVHEMGHSMHSTFTRE
NQPYVYGDYPIFLAEIASTTNENILTESLLAASTDEKVRFAILNHWLDGFRGTVFRQSQFAEFEHEIHKADQEGKVLTSE
FMNQLYAELNEKYYGLPARENPEIQYEWARIPHFYYNYYVFQYATGFAAATYLAEDIVNGGTDAREKYLTYLKAGSSDYP
LAVIAQAGVDMEETTYLESAFAVFEKRLIELEKLVEKGAHL
Nucleotide
Download Length: 1806 bp
>NTDB_id=284572 C9I44_RS02905 WP_004258979.1 554789..556594(+) (pepF) [Lactococcus garvieae strain IBB3403]
ATGGCAAAAAAACGTGATGAAATAGCTGAAAACTTAACTTGGGATTTGTCAACTGTATTTGAAAATGATGCCGCCTGGGA
ACTTGAACTTAAAAGAGTTTCGGAAAAATTAGAGACGGTAAACGCCTACGAAGGACATCTTCTAGATAGCGCTCAAAGCT
TATTAGAAATCACGGAAATGGAGCTAGAAATCTCGCGTGCTGTGGAAAAGGTTTATGTCTATGCCTCAATGAAGCATGAC
CAAGATACGCAAGTGAGCCTTTACCAAGAATACGAAGCCAAAGCCACAAATTTATATGCCAAGTTTGGTGAAAGCTTTGC
TTTTTACGAGCCGGAATTTTTAGCTTTAACGCCAGAACGTTATGAAAGTTTTAGAAGAGAAGAACCTAAACTGGAACACT
ATTCCCATATGTTTGAACGCCTTTTTGCTAAAAAGGAGCATATTTTAAGTCCAAAAGAGGAAAAACTTTTAGCCAGTGCG
AGTGAGATTTTTGGTGCTGCGGCCGAAACCTTTGAAATTTTTGACAATGCTGATATTGAACTTCCGATGATTAAAGATGA
AAAAGGACAGGAAGTACAGCTGACACATGGCAATTATATCTCGCTCATGGAAAGTAAGGAGCGTAAGGTACGAAAGGCAG
CTTATCAAGCCCTTTATAGCAACTATGAACAGTATCAACACACTTATGCTAAAACGCTACAAACAAATGTAAAAGTCCAT
AATTTTAAGGCAAAGATGCGGGGCTACCATTCAGCTCGTCAGGCAGCTTTATCAAGTAATTTTATTCCGGAAGAAGTCTA
CGATAAGCTCTTAGAGTCTGTCAATAAATATTTGCCTCTTTTACATCGCTATATTAAATTGCGTGAACAGATTTTAGGCT
TAGAAGACGATTTAAAGATGTATGATGTTTATACACCCTTATCGGACTTGGATTATAAGTTTAACTACCCAGAGGCAGTA
GAGAAAGCCCAAGAAGTTCTTCAAATTTTGGGGCCTGAATATGCGCACCATGTAAAAAAAGCTTTTGAGGAGCGTTGGAT
TGATGTGGCAGAAAATAGCGGTAAACGTTCGGGTGCTTACTCAGGTGGATGCTATGATACAAATGCTTTTATGCTGTTAA
ACTGGCAAGAAACTTTGGATGATTTGTTCACCTTAGTACATGAAATGGGGCACAGTATGCATTCCACATTTACACGGGAA
AATCAACCTTATGTTTATGGGGACTATCCAATCTTTCTTGCAGAAATTGCTTCAACAACCAATGAGAATATCTTGACTGA
AAGTTTACTTGCGGCCTCGACAGATGAAAAAGTGCGTTTTGCTATTTTAAACCACTGGCTTGATGGTTTCCGTGGCACTG
TTTTTCGTCAAAGTCAATTTGCTGAATTTGAACATGAAATACATAAAGCTGATCAAGAAGGAAAAGTTTTGACCAGTGAA
TTCATGAACCAGCTTTATGCAGAACTTAATGAAAAATACTATGGTTTACCCGCCCGGGAAAATCCTGAAATTCAGTATGA
GTGGGCCCGCATTCCGCACTTCTATTACAACTATTATGTCTTCCAATATGCTACTGGCTTTGCTGCAGCAACTTATCTTG
CTGAGGATATCGTTAATGGTGGGACAGATGCGCGTGAAAAATACCTCACTTATCTCAAAGCCGGATCAAGTGATTATCCC
CTGGCTGTGATTGCTCAAGCAGGTGTGGATATGGAAGAAACAACATATTTAGAATCAGCTTTTGCTGTTTTTGAAAAACG
TTTAATTGAGCTAGAAAAATTAGTCGAAAAAGGAGCCCATTTATAA
ATGGCAAAAAAACGTGATGAAATAGCTGAAAACTTAACTTGGGATTTGTCAACTGTATTTGAAAATGATGCCGCCTGGGA
ACTTGAACTTAAAAGAGTTTCGGAAAAATTAGAGACGGTAAACGCCTACGAAGGACATCTTCTAGATAGCGCTCAAAGCT
TATTAGAAATCACGGAAATGGAGCTAGAAATCTCGCGTGCTGTGGAAAAGGTTTATGTCTATGCCTCAATGAAGCATGAC
CAAGATACGCAAGTGAGCCTTTACCAAGAATACGAAGCCAAAGCCACAAATTTATATGCCAAGTTTGGTGAAAGCTTTGC
TTTTTACGAGCCGGAATTTTTAGCTTTAACGCCAGAACGTTATGAAAGTTTTAGAAGAGAAGAACCTAAACTGGAACACT
ATTCCCATATGTTTGAACGCCTTTTTGCTAAAAAGGAGCATATTTTAAGTCCAAAAGAGGAAAAACTTTTAGCCAGTGCG
AGTGAGATTTTTGGTGCTGCGGCCGAAACCTTTGAAATTTTTGACAATGCTGATATTGAACTTCCGATGATTAAAGATGA
AAAAGGACAGGAAGTACAGCTGACACATGGCAATTATATCTCGCTCATGGAAAGTAAGGAGCGTAAGGTACGAAAGGCAG
CTTATCAAGCCCTTTATAGCAACTATGAACAGTATCAACACACTTATGCTAAAACGCTACAAACAAATGTAAAAGTCCAT
AATTTTAAGGCAAAGATGCGGGGCTACCATTCAGCTCGTCAGGCAGCTTTATCAAGTAATTTTATTCCGGAAGAAGTCTA
CGATAAGCTCTTAGAGTCTGTCAATAAATATTTGCCTCTTTTACATCGCTATATTAAATTGCGTGAACAGATTTTAGGCT
TAGAAGACGATTTAAAGATGTATGATGTTTATACACCCTTATCGGACTTGGATTATAAGTTTAACTACCCAGAGGCAGTA
GAGAAAGCCCAAGAAGTTCTTCAAATTTTGGGGCCTGAATATGCGCACCATGTAAAAAAAGCTTTTGAGGAGCGTTGGAT
TGATGTGGCAGAAAATAGCGGTAAACGTTCGGGTGCTTACTCAGGTGGATGCTATGATACAAATGCTTTTATGCTGTTAA
ACTGGCAAGAAACTTTGGATGATTTGTTCACCTTAGTACATGAAATGGGGCACAGTATGCATTCCACATTTACACGGGAA
AATCAACCTTATGTTTATGGGGACTATCCAATCTTTCTTGCAGAAATTGCTTCAACAACCAATGAGAATATCTTGACTGA
AAGTTTACTTGCGGCCTCGACAGATGAAAAAGTGCGTTTTGCTATTTTAAACCACTGGCTTGATGGTTTCCGTGGCACTG
TTTTTCGTCAAAGTCAATTTGCTGAATTTGAACATGAAATACATAAAGCTGATCAAGAAGGAAAAGTTTTGACCAGTGAA
TTCATGAACCAGCTTTATGCAGAACTTAATGAAAAATACTATGGTTTACCCGCCCGGGAAAATCCTGAAATTCAGTATGA
GTGGGCCCGCATTCCGCACTTCTATTACAACTATTATGTCTTCCAATATGCTACTGGCTTTGCTGCAGCAACTTATCTTG
CTGAGGATATCGTTAATGGTGGGACAGATGCGCGTGAAAAATACCTCACTTATCTCAAAGCCGGATCAAGTGATTATCCC
CTGGCTGTGATTGCTCAAGCAGGTGTGGATATGGAAGAAACAACATATTTAGAATCAGCTTTTGCTGTTTTTGAAAAACG
TTTAATTGAGCTAGAAAAATTAGTCGAAAAAGGAGCCCATTTATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pepF | Streptococcus salivarius strain HSISS4 |
64.892 |
100 |
0.649 |