Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AMET_RS00200 Genome accession   NC_009633
Coordinates   44256..44696 (+) Length   146 a.a.
NCBI ID   WP_011971185.1    Uniprot ID   A6TJA8
Organism   Alkaliphilus metalliredigens QYMF     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 39256..49696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMET_RS00170 (Amet_0027) yedF 40091..40726 (+) 636 WP_011971179.1 sulfurtransferase-like selenium metabolism protein YedF -
  AMET_RS00175 (Amet_0028) - 40741..41007 (+) 267 WP_011971180.1 DUF3343 domain-containing protein -
  AMET_RS00180 (Amet_0029) - 41021..41905 (+) 885 WP_011971181.1 mechanosensitive ion channel family protein -
  AMET_RS00185 (Amet_0030) - 42014..42208 (+) 195 WP_011971182.1 DUF951 domain-containing protein -
  AMET_RS00190 (Amet_0031) - 42372..43565 (+) 1194 WP_011971183.1 PLP-dependent aminotransferase family protein -
  AMET_RS00195 (Amet_0032) rpsF 43948..44232 (+) 285 WP_011971184.1 30S ribosomal protein S6 -
  AMET_RS00200 (Amet_0033) ssb 44256..44696 (+) 441 WP_011971185.1 single-stranded DNA-binding protein Machinery gene
  AMET_RS00205 (Amet_0034) rpsR 44715..44945 (+) 231 WP_011971186.1 30S ribosomal protein S18 -
  AMET_RS00210 (Amet_0035) - 45115..46218 (+) 1104 WP_011971187.1 YibE/F family protein -
  AMET_RS00215 (Amet_0036) - 46365..46781 (+) 417 WP_011971188.1 hypothetical protein -
  AMET_RS00220 (Amet_0037) - 47045..47647 (+) 603 WP_011971189.1 50S ribosomal protein L25 -
  AMET_RS00225 (Amet_0038) - 47781..48395 (+) 615 WP_011971190.1 50S ribosomal protein L25 -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16523.34 Da        Isoelectric Point: 4.6823

>NTDB_id=28383 AMET_RS00200 WP_011971185.1 44256..44696(+) (ssb) [Alkaliphilus metalliredigens QYMF]
MNRVVMIGRLARDPELRFTASGKAVATFSIAVNKTFSKEKQADFFNVVVWNKTAENCANYLAKGRLVGLDGRLQSRSYET
KNGDKRYVTEIVADQVEFLEWGDKNSQPNQTSQKPKQDFGKSDDFNSADIDINDFQAIDEDDDIPF

Nucleotide


Download         Length: 441 bp        

>NTDB_id=28383 AMET_RS00200 WP_011971185.1 44256..44696(+) (ssb) [Alkaliphilus metalliredigens QYMF]
ATGAATAGAGTAGTAATGATTGGACGTCTTGCAAGAGACCCAGAGTTACGTTTTACTGCAAGCGGAAAAGCGGTAGCCAC
CTTTAGTATTGCAGTGAACAAAACCTTTTCTAAGGAGAAGCAAGCAGATTTTTTCAATGTTGTTGTATGGAATAAAACTG
CTGAAAACTGTGCTAATTATTTAGCAAAGGGAAGGTTAGTAGGACTAGATGGTAGGCTTCAAAGCCGATCCTATGAAACT
AAAAATGGAGATAAACGATACGTTACAGAAATTGTAGCAGATCAAGTTGAATTTTTGGAATGGGGAGATAAAAATTCTCA
GCCGAATCAAACGAGCCAAAAACCTAAACAAGATTTTGGTAAATCAGATGATTTCAATTCAGCGGATATAGATATTAATG
ATTTCCAAGCCATCGACGAAGACGATGACATTCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A6TJA8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

44

100

0.527
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.282

70.548

0.404
  ssb Neisseria meningitidis MC58

33.721

100

0.397
  ssb Neisseria gonorrhoeae MS11

33.721

100

0.397
  ssbB Streptococcus sobrinus strain NIDR 6715-7

37.838

100

0.384
  ssbB/cilA Streptococcus mitis NCTC 12261

37.162

100

0.377
  ssbB/cilA Streptococcus pneumoniae Rx1

36.486

100

0.37
  ssbB/cilA Streptococcus pneumoniae D39

36.486

100

0.37
  ssbB/cilA Streptococcus pneumoniae R6

36.486

100

0.37
  ssb Vibrio cholerae strain A1552

31.034

100

0.37
  ssbA Streptococcus mutans UA159

35.811

100

0.363
  ssbB/cilA Streptococcus pneumoniae TIGR4

35.811

100

0.363

Multiple sequence alignment