Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   C7M26_RS16820 Genome accession   NZ_CP028212
Coordinates   3196585..3196926 (+) Length   113 a.a.
NCBI ID   WP_029726038.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102748     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3191585..3201926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M26_RS16780 (C7M26_03300) rapD 3191716..3192780 (-) 1065 WP_014481149.1 aspartate phosphatase RapD -
  C7M26_RS16785 (C7M26_03301) fabZ 3192972..3193397 (+) 426 WP_003221796.1 3-hydroxyacyl-ACP dehydratase FabZ -
  C7M26_RS16790 (C7M26_03302) mscL 3193469..3193864 (+) 396 WP_021445844.1 large conductance mechanosensitive channel protein MscL -
  C7M26_RS16795 (C7M26_03303) ywpD 3193912..3194748 (-) 837 WP_032722844.1 histidine kinase -
  C7M26_RS16800 - 3194677..3195021 (+) 345 WP_142402754.1 prealbumin-like fold domain-containing protein -
  C7M26_RS16805 (C7M26_03304) - 3195008..3195400 (+) 393 Protein_3300 class A sortase -
  C7M26_RS16810 (C7M26_03305) ywpF 3195540..3195950 (-) 411 WP_003227794.1 YwpF-like family protein -
  C7M26_RS16815 (C7M26_03306) ywpG 3196125..3196508 (+) 384 WP_014478204.1 DynA interaction protein YwpG -
  C7M26_RS16820 (C7M26_03307) ssbB 3196585..3196926 (+) 342 WP_029726038.1 single-stranded DNA-binding protein SsbB Machinery gene
  C7M26_RS16825 (C7M26_03308) glcR 3197151..3197927 (+) 777 WP_003244075.1 transcriptional regulator GlcR -
  C7M26_RS16830 (C7M26_03309) ywpJ 3197933..3198790 (+) 858 WP_032722672.1 phosphatase YwpJ -
  C7M26_RS16835 (C7M26_03310) hepAB 3198916..3201684 (-) 2769 WP_015714840.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12471.12 Da        Isoelectric Point: 7.8468

>NTDB_id=283128 C7M26_RS16820 WP_029726038.1 3196585..3196926(+) (ssbB) [Bacillus subtilis strain SRCM102748]
MFNHVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENAEGVNVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=283128 C7M26_RS16820 WP_029726038.1 3196585..3196926(+) (ssbB) [Bacillus subtilis strain SRCM102748]
ATGTTCAATCATGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCGCCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGCTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACACGA
AGCTATGAAAACGCGGAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

98.23

100

0.982
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.151

93.805

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

59.434

93.805

0.558
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.37

95.575

0.434
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.444

95.575

0.425
  ssbB/cilA Streptococcus mitis NCTC 12261

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae Rx1

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae D39

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae R6

43.519

95.575

0.416
  ssbB/cilA Streptococcus mitis SK321

43.519

95.575

0.416
  ssbA Streptococcus mutans UA159

44.34

93.805

0.416
  ssbB Lactococcus lactis subsp. cremoris KW2

41.905

92.92

0.389

Multiple sequence alignment