Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   C7M23_RS06030 Genome accession   NZ_CP028209
Coordinates   1146506..1146847 (+) Length   113 a.a.
NCBI ID   WP_160243187.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102745     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1141506..1151847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M23_RS05990 (C7M23_01174) rapD 1141666..1142730 (-) 1065 WP_029318731.1 aspartate phosphatase RapD -
  C7M23_RS05995 (C7M23_01175) fabZ 1142922..1143347 (+) 426 WP_003221796.1 3-hydroxyacyl-ACP dehydratase FabZ -
  C7M23_RS06000 (C7M23_01176) mscL 1143420..1143812 (+) 393 WP_003242893.1 large conductance mechanosensitive channel protein MscL -
  C7M23_RS06005 (C7M23_01177) ywpD 1143859..1144695 (-) 837 WP_003227787.1 histidine kinase -
  C7M23_RS06010 - 1144624..1144956 (+) 333 WP_250622482.1 SpaA isopeptide-forming pilin-related protein -
  C7M23_RS06015 (C7M23_01178) - 1144943..1145335 (+) 393 Protein_1147 class A sortase -
  C7M23_RS06020 (C7M23_01179) ywpF 1145461..1145871 (-) 411 WP_003227794.1 YwpF-like family protein -
  C7M23_RS06025 (C7M23_01180) ywpG 1146046..1146429 (+) 384 WP_003227796.1 DynA interaction protein YwpG -
  C7M23_RS06030 (C7M23_01181) ssbB 1146506..1146847 (+) 342 WP_160243187.1 single-stranded DNA-binding protein SsbB Machinery gene
  C7M23_RS06035 (C7M23_01182) glcR 1147072..1147848 (+) 777 WP_003244075.1 transcriptional regulator GlcR -
  C7M23_RS06040 (C7M23_01183) ywpJ 1147854..1148711 (+) 858 WP_017696583.1 phosphatase YwpJ -
  C7M23_RS06045 (C7M23_01184) hepAB 1148839..1151607 (-) 2769 WP_088467425.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12545.18 Da        Isoelectric Point: 7.9832

>NTDB_id=282855 C7M23_RS06030 WP_160243187.1 1146506..1146847(+) (ssbB) [Bacillus subtilis strain SRCM102745]
MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYWQKGSLVGVSGRIQTR
SYENAEGVNVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=282855 C7M23_RS06030 WP_160243187.1 1146506..1146847(+) (ssbB) [Bacillus subtilis strain SRCM102745]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCGCCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGCTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGGCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGCGGAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

98.23

100

0.982
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.151

93.805

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

59.434

93.805

0.558
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.37

95.575

0.434
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.444

95.575

0.425
  ssbB/cilA Streptococcus mitis NCTC 12261

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae Rx1

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae D39

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae R6

43.519

95.575

0.416
  ssbB/cilA Streptococcus mitis SK321

43.519

95.575

0.416
  ssbA Streptococcus mutans UA159

44.34

93.805

0.416
  ssbB Lactococcus lactis subsp. cremoris KW2

41.905

92.92

0.389

Multiple sequence alignment