Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   D0871_RS06490 Genome accession   NZ_CP033141
Coordinates   1298498..1300330 (+) Length   610 a.a.
NCBI ID   WP_005494715.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 160807     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1293498..1305330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0871_RS06475 (D0871_06475) - 1294225..1294992 (+) 768 WP_005465078.1 nucleotidyltransferase domain-containing protein -
  D0871_RS06480 (D0871_06480) - 1294989..1297352 (-) 2364 WP_122015973.1 DNA polymerase II -
  D0871_RS06485 (D0871_06485) letA 1297852..1298496 (+) 645 WP_005386783.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  D0871_RS06490 (D0871_06490) uvrC 1298498..1300330 (+) 1833 WP_005494715.1 excinuclease ABC subunit UvrC Machinery gene
  D0871_RS06495 (D0871_06495) pgsA 1300377..1300934 (+) 558 WP_005494716.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -

Sequence

Protein


Download         Length: 610 a.a.        Molecular weight: 69248.43 Da        Isoelectric Point: 9.5525

>NTDB_id=282364 D0871_RS06490 WP_005494715.1 1298498..1300330(+) (uvrC) [Vibrio parahaemolyticus strain 160807]
MNPPFDSASFLKTVTHQPGVYRMYNADAVVIYVGKAKDLQKRLSSYFRKKVDSEKTRALVSNIAKIDVTVTHTETEALIL
EHNYIKQYLPKYNVLLRDDKSYPYIFISGHKHPRLSMHRGAKKRKGEYFGPYPDSGAVRETLHLLQKIFPVRQCEDTVYS
NRTRPCLMYQIGRCAGPCVSSIISDEEYAELVGFVRLFLQGKDQQVLKQLIEKMEVASQQLRFEDAAKFRDQIQAIRRVQ
EQQYVSEDSMDDMDVLGFAQENGIACIHILMIRQGKVLGSRSHFPKIPQNTSQQEVFDSFLTQYYLSHNEARTIPSRIIL
NQELADDLEPIQKALSEVAGRKVHFHTSPTGARGRYLKLSNTNALTAITTKINHKMTINQRFKALRETLGMESIMRMECF
DISHTMGESTIASCVVFNNEGPVKQEYRRYNITGITGGDDYAAMGQALERRYSKQLDVEKIPDIIFIDGGKGQLNRAHEI
IAQYWGDWPKRPIMIGIAKGVTRKPGLETLITVDGEEFNLPSDAPALHLIQHIRDESHNHAIAGHRAKRGKTRRTSALEG
IEGVGPKRRQALLKYMGGLQELKRASVEEIAKVPGISHSLAEIIFQALKQ

Nucleotide


Download         Length: 1833 bp        

>NTDB_id=282364 D0871_RS06490 WP_005494715.1 1298498..1300330(+) (uvrC) [Vibrio parahaemolyticus strain 160807]
GTGAATCCTCCTTTCGATTCGGCTTCCTTTCTCAAGACAGTAACTCATCAGCCCGGCGTGTACCGCATGTACAACGCCGA
TGCTGTTGTTATTTACGTCGGTAAAGCCAAAGATCTTCAAAAACGCCTTTCTAGTTACTTTCGCAAAAAAGTCGACAGTG
AAAAAACACGCGCTTTGGTGAGCAATATTGCCAAAATAGATGTCACGGTGACGCATACCGAGACAGAAGCGCTGATTCTT
GAACACAATTACATCAAGCAGTATTTGCCGAAATATAACGTGCTTCTGCGTGATGATAAATCGTACCCTTATATATTCAT
TAGCGGTCATAAACATCCGAGATTGTCGATGCACCGTGGGGCCAAGAAGCGTAAAGGCGAGTATTTTGGTCCTTACCCTG
ACTCAGGGGCGGTACGAGAAACGCTGCACTTGCTGCAAAAAATATTTCCTGTTAGACAGTGTGAAGATACGGTTTACTCC
AATCGAACGCGCCCTTGCTTGATGTATCAAATTGGTCGCTGCGCTGGCCCGTGTGTTAGCTCGATTATCTCAGATGAAGA
GTATGCTGAGCTGGTGGGTTTTGTTCGTCTATTTCTGCAAGGTAAAGATCAGCAAGTACTGAAGCAGTTGATAGAGAAAA
TGGAGGTTGCTAGTCAGCAACTTCGGTTTGAAGACGCGGCAAAGTTTCGTGATCAGATACAAGCGATAAGACGAGTCCAA
GAACAGCAATATGTATCGGAAGACAGCATGGACGATATGGATGTGCTGGGTTTTGCGCAAGAGAACGGCATTGCTTGCAT
CCACATATTGATGATTCGTCAGGGTAAAGTGTTAGGCAGTCGCAGTCATTTCCCTAAGATTCCTCAAAACACGAGCCAAC
AAGAGGTATTCGATAGCTTTTTGACTCAGTACTACCTGAGCCACAATGAGGCGCGAACAATCCCATCTCGAATAATACTG
AACCAAGAGTTGGCCGACGATCTCGAACCCATTCAAAAAGCACTGAGTGAAGTCGCAGGACGTAAGGTTCATTTTCATAC
TTCTCCGACTGGTGCGAGAGGGAGATATCTTAAACTGTCTAATACCAATGCACTTACTGCCATCACGACAAAAATCAACC
ATAAGATGACGATCAACCAACGTTTCAAAGCACTTCGCGAGACGCTGGGAATGGAGTCTATTATGAGGATGGAGTGTTTT
GATATTTCCCATACGATGGGCGAGAGCACTATCGCATCATGTGTGGTCTTCAACAACGAAGGTCCGGTAAAGCAAGAATA
CCGACGCTATAACATTACTGGAATCACGGGTGGCGATGATTATGCAGCGATGGGGCAGGCGTTAGAGCGGCGCTACTCAA
AGCAGTTGGACGTAGAAAAAATCCCTGACATCATCTTTATTGATGGTGGTAAAGGTCAGTTAAATCGTGCGCATGAAATC
ATCGCCCAGTATTGGGGAGATTGGCCTAAGCGACCAATCATGATTGGTATTGCCAAAGGTGTAACACGTAAACCTGGCCT
TGAAACCTTAATTACGGTTGATGGCGAAGAGTTCAACTTACCTAGTGACGCTCCAGCGCTACATTTGATTCAACATATTC
GCGATGAGAGTCATAATCATGCGATTGCGGGTCACAGAGCGAAACGTGGTAAAACTCGACGTACAAGTGCGTTGGAGGGG
ATTGAAGGTGTTGGGCCCAAACGACGCCAAGCTTTATTGAAATACATGGGTGGATTGCAGGAACTTAAGCGTGCAAGTGT
TGAAGAAATCGCCAAAGTGCCGGGAATTAGTCACTCTTTAGCAGAAATTATTTTCCAAGCATTGAAACAATAA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(205-238)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(387-542)

GIY-YIG catalytic domain (GIY-YIG)

(18-93)

Helix-hairpin-helix domain (HHH_5)

(558-609)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

36.244

99.508

0.361

Multiple sequence alignment