Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   C7M16_RS16980 Genome accession   NZ_CP028201
Coordinates   3374871..3375212 (-) Length   113 a.a.
NCBI ID   WP_014478203.1    Uniprot ID   A0A0C3GLH9
Organism   Bacillus subtilis strain SRCM102753     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3369871..3380212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M16_RS16965 (C7M16_03349) hepAB 3370114..3372882 (+) 2769 WP_003227803.1 DEAD/DEAH box helicase -
  C7M16_RS16970 (C7M16_03350) ywpJ 3373007..3373864 (-) 858 WP_160221870.1 phosphatase YwpJ -
  C7M16_RS16975 (C7M16_03351) glcR 3373870..3374646 (-) 777 WP_003244075.1 transcriptional regulator GlcR -
  C7M16_RS16980 (C7M16_03352) ssbB 3374871..3375212 (-) 342 WP_014478203.1 single-stranded DNA-binding protein SsbB Machinery gene
  C7M16_RS16985 (C7M16_03353) ywpG 3375289..3375672 (-) 384 WP_108029070.1 DynA interaction protein YwpG -
  C7M16_RS16990 (C7M16_03354) ywpF 3375847..3376257 (+) 411 WP_015251046.1 YwpF-like family protein -
  C7M16_RS16995 (C7M16_03355) - 3376397..3376789 (-) 393 Protein_3345 class A sortase -
  C7M16_RS20770 - 3376776..3377141 (-) 366 WP_259407082.1 prealbumin-like fold domain-containing protein -
  C7M16_RS17005 (C7M16_03356) ywpD 3377049..3377885 (+) 837 WP_250635107.1 histidine kinase -
  C7M16_RS17010 (C7M16_03357) mscL 3377934..3378329 (-) 396 WP_021445844.1 large conductance mechanosensitive channel protein MscL -
  C7M16_RS17015 (C7M16_03358) fabZ 3378402..3378827 (-) 426 WP_003221796.1 3-hydroxyacyl-ACP dehydratase FabZ -
  C7M16_RS17020 (C7M16_03359) rapD 3379019..3380083 (+) 1065 WP_014481149.1 aspartate phosphatase RapD -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12462.11 Da        Isoelectric Point: 7.8150

>NTDB_id=282364 C7M16_RS16980 WP_014478203.1 3374871..3375212(-) (ssbB) [Bacillus subtilis strain SRCM102753]
MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENAEGVNVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=282364 C7M16_RS16980 WP_014478203.1 3374871..3375212(-) (ssbB) [Bacillus subtilis strain SRCM102753]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCGCCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGTTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGAGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGCGGAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C3GLH9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

99.115

100

0.991
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.151

93.805

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

59.434

93.805

0.558
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.37

95.575

0.434
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.444

95.575

0.425
  ssbB/cilA Streptococcus mitis NCTC 12261

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae Rx1

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae D39

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae R6

43.519

95.575

0.416
  ssbB/cilA Streptococcus mitis SK321

43.519

95.575

0.416
  ssbA Streptococcus mutans UA159

44.34

93.805

0.416
  ssbB Lactococcus lactis subsp. cremoris KW2

41.905

92.92

0.389

Multiple sequence alignment