Detailed information
Bioinformatically predicted
Overview
| Name | pilA/pilAI | Type | Machinery gene |
| Locus tag | XFASM12_RS09915 | Genome accession | NC_010513 |
| Coordinates | 2212890..2213330 (+) | Length | 146 a.a. |
| NCBI ID | WP_012338104.1 | Uniprot ID | - |
| Organism | Xylella fastidiosa M12 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2207890..2218330
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| XFASM12_RS09895 (Xfasm12_2106) | coaE | 2207991..2208614 (-) | 624 | WP_004084593.1 | dephospho-CoA kinase | - |
| XFASM12_RS09900 (Xfasm12_2107) | pilD | 2208626..2209489 (-) | 864 | WP_004084594.1 | A24 family peptidase | Machinery gene |
| XFASM12_RS09905 (Xfasm12_2108) | pilC | 2209496..2210698 (-) | 1203 | WP_010894959.1 | type II secretion system F family protein | Machinery gene |
| XFASM12_RS09910 (Xfasm12_2109) | pilA | 2211139..2211588 (+) | 450 | WP_012338101.1 | pilin | Machinery gene |
| XFASM12_RS11970 (Xfasm12_2110) | - | 2211830..2212057 (-) | 228 | WP_012338102.1 | hypothetical protein | - |
| XFASM12_RS09915 (Xfasm12_2112) | pilA/pilAI | 2212890..2213330 (+) | 441 | WP_012338104.1 | pilin | Machinery gene |
| XFASM12_RS09920 (Xfasm12_2114) | pilB | 2214170..2215903 (+) | 1734 | WP_012338105.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| XFASM12_RS09925 (Xfasm12_2115) | - | 2215997..2217409 (-) | 1413 | WP_020851962.1 | sigma-54 dependent transcriptional regulator | - |
Sequence
Protein
Download Length: 146 a.a. Molecular weight: 14979.22 Da Isoelectric Point: 8.1165
>NTDB_id=28042 XFASM12_RS09915 WP_012338104.1 2212890..2213330(+) (pilA/pilAI) [Xylella fastidiosa M12]
MKKQQGFTLIELMIVIAIIAILAAIALPMYQNYVARSQVAAALAEITPGRTQAEIRMADGQASNTPNAIGLRTPTARCSL
VTVDITTTGGTIVCTMVGNGQVNNQTITLTRIADNNAGQGGVNTGGNWTCTTTAPAALTPAGCTGT
MKKQQGFTLIELMIVIAIIAILAAIALPMYQNYVARSQVAAALAEITPGRTQAEIRMADGQASNTPNAIGLRTPTARCSL
VTVDITTTGGTIVCTMVGNGQVNNQTITLTRIADNNAGQGGVNTGGNWTCTTTAPAALTPAGCTGT
Nucleotide
Download Length: 441 bp
>NTDB_id=28042 XFASM12_RS09915 WP_012338104.1 2212890..2213330(+) (pilA/pilAI) [Xylella fastidiosa M12]
ATGAAAAAGCAACAAGGCTTCACTTTGATCGAGCTGATGATCGTCATTGCGATCATTGCCATCCTGGCCGCGATCGCTCT
GCCGATGTATCAGAATTATGTCGCCAGGTCTCAAGTCGCAGCGGCGCTGGCCGAGATCACACCGGGCCGAACACAAGCCG
AAATCCGTATGGCTGATGGACAGGCTTCAAACACTCCTAACGCTATTGGATTACGCACCCCGACCGCTCGTTGCAGCCTC
GTTACGGTCGACATCACAACTACTGGCGGCACAATCGTATGTACGATGGTTGGTAATGGTCAGGTCAACAATCAAACTAT
CACCTTGACCCGCATCGCTGATAACAACGCAGGCCAAGGTGGCGTCAATACTGGGGGGAACTGGACCTGTACCACAACCG
CGCCTGCAGCGTTAACTCCAGCAGGCTGCACTGGAACCTAA
ATGAAAAAGCAACAAGGCTTCACTTTGATCGAGCTGATGATCGTCATTGCGATCATTGCCATCCTGGCCGCGATCGCTCT
GCCGATGTATCAGAATTATGTCGCCAGGTCTCAAGTCGCAGCGGCGCTGGCCGAGATCACACCGGGCCGAACACAAGCCG
AAATCCGTATGGCTGATGGACAGGCTTCAAACACTCCTAACGCTATTGGATTACGCACCCCGACCGCTCGTTGCAGCCTC
GTTACGGTCGACATCACAACTACTGGCGGCACAATCGTATGTACGATGGTTGGTAATGGTCAGGTCAACAATCAAACTAT
CACCTTGACCCGCATCGCTGATAACAACGCAGGCCAAGGTGGCGTCAATACTGGGGGGAACTGGACCTGTACCACAACCG
CGCCTGCAGCGTTAACTCCAGCAGGCTGCACTGGAACCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
45.578 |
100 |
0.459 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
42.466 |
100 |
0.425 |
| pilA | Vibrio cholerae strain A1552 |
38.509 |
100 |
0.425 |
| pilA | Vibrio cholerae C6706 |
38.509 |
100 |
0.425 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
38.509 |
100 |
0.425 |
| pilA | Pseudomonas aeruginosa PAK |
38.365 |
100 |
0.418 |
| pilA | Acinetobacter baumannii strain A118 |
39.865 |
100 |
0.404 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
38.621 |
99.315 |
0.384 |
| comP | Acinetobacter baylyi ADP1 |
35.897 |
100 |
0.384 |
| pilA | Haemophilus influenzae Rd KW20 |
36.486 |
100 |
0.37 |
| pilA | Haemophilus influenzae 86-028NP |
36.552 |
99.315 |
0.363 |