Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   C6Y50_RS11600 Genome accession   NZ_CP027664
Coordinates   2454780..2455997 (+) Length   405 a.a.
NCBI ID   WP_106442875.1    Uniprot ID   -
Organism   Stutzerimonas stutzeri strain 1W1-1A     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2449780..2460997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6Y50_RS11585 (C6Y50_11590) cysN 2450155..2452053 (+) 1899 WP_106442872.1 sulfate adenylyltransferase subunit CysN -
  C6Y50_RS21505 (C6Y50_11595) pilA/pilA1 2452317..2452754 (-) 438 WP_106442873.1 pilin Machinery gene
  C6Y50_RS11595 (C6Y50_11600) pilB 2453074..2454777 (+) 1704 WP_106442874.1 type IV-A pilus assembly ATPase PilB Machinery gene
  C6Y50_RS11600 (C6Y50_11605) pilC 2454780..2455997 (+) 1218 WP_106442875.1 type II secretion system F family protein Machinery gene
  C6Y50_RS11605 (C6Y50_11610) pilD 2456000..2456869 (+) 870 WP_106442876.1 prepilin peptidase Machinery gene
  C6Y50_RS11610 (C6Y50_11615) coaE 2457001..2457609 (+) 609 WP_106442877.1 dephospho-CoA kinase -
  C6Y50_RS11615 (C6Y50_11620) yacG 2457606..2457803 (+) 198 WP_095460669.1 DNA gyrase inhibitor YacG -
  C6Y50_RS11620 (C6Y50_11625) - 2457816..2458496 (-) 681 WP_013981946.1 energy-coupling factor ABC transporter permease -
  C6Y50_RS11625 (C6Y50_11630) - 2458553..2459593 (-) 1041 WP_106442878.1 NADP(H)-dependent aldo-keto reductase -
  C6Y50_RS11630 (C6Y50_11635) rplM 2460008..2460436 (+) 429 WP_003287302.1 50S ribosomal protein L13 -
  C6Y50_RS11635 (C6Y50_11640) rpsI 2460452..2460844 (+) 393 WP_013981948.1 30S ribosomal protein S9 -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44048.74 Da        Isoelectric Point: 9.8747

>NTDB_id=278780 C6Y50_RS11600 WP_106442875.1 2454780..2455997(+) (pilC) [Stutzerimonas stutzeri strain 1W1-1A]
MAQKAIRTSVFSWEGTDRKGSKVKGELSGASPALVKAQLRKQGINPQKVRKKSVSLFGAGKKIKPMDIALFTRQMATMMK
AGVPLLQSFDIIGEGFDNPNMRKLVDDLKQEVAAGNSFATALRKKPQYFDDLYCNLVDSGEQSGALETLLDRVATYKEKT
EALKAKIKKAMNYPIAVVVVAIIVSAILLIKVVPQFQEVFANFGAELPAFTLMVIGLSEALQEWWFIILAGLIAGAFAFK
EGHKRSEKFRNWFDRLLLKVPVVGDILYKSSVARFARTLSTTFAAGVPLVDALDSVAGATGNVVFRGATMKVKNDVSSGM
QLNFSMRTTGTFPTMAVQMTAIGEESGSLDEMLAKVATFYEDEVDNMVDGLTSLMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGAVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=278780 C6Y50_RS11600 WP_106442875.1 2454780..2455997(+) (pilC) [Stutzerimonas stutzeri strain 1W1-1A]
ATGGCGCAGAAAGCGATCAGAACCAGTGTGTTCAGCTGGGAGGGAACCGACCGCAAGGGCAGCAAGGTCAAGGGTGAGCT
CAGTGGCGCTAGCCCGGCGCTGGTGAAGGCACAGTTGCGCAAGCAAGGGATCAATCCACAAAAAGTGCGGAAGAAGTCGG
TGTCTCTGTTTGGTGCGGGCAAGAAAATTAAACCCATGGATATCGCGCTGTTCACCCGACAGATGGCGACCATGATGAAA
GCCGGCGTGCCGCTGCTGCAGTCTTTCGATATCATCGGCGAGGGGTTCGACAATCCGAACATGCGCAAGCTGGTGGATGA
TCTGAAGCAGGAAGTTGCGGCGGGTAACAGCTTCGCGACGGCTTTGCGCAAGAAGCCGCAATACTTCGATGACCTGTATT
GCAACCTGGTCGATTCCGGTGAGCAGTCGGGTGCCTTGGAAACCCTGCTCGATCGCGTGGCGACTTACAAGGAAAAGACC
GAGGCATTGAAGGCCAAGATCAAGAAGGCTATGAACTATCCCATTGCGGTAGTAGTGGTGGCGATCATCGTGTCGGCCAT
TCTGTTGATCAAGGTAGTGCCACAGTTCCAAGAGGTGTTCGCCAATTTCGGAGCTGAGCTTCCTGCTTTTACCTTGATGG
TCATTGGGTTGTCGGAGGCTCTGCAGGAGTGGTGGTTCATTATTCTGGCAGGTTTGATCGCTGGGGCTTTTGCTTTCAAG
GAGGGGCACAAGCGCTCCGAGAAATTTCGCAACTGGTTCGATCGTTTGCTGCTGAAGGTGCCAGTTGTTGGCGACATTCT
TTACAAGTCATCCGTAGCCCGTTTTGCTCGAACCCTGTCAACGACTTTTGCTGCTGGTGTGCCGCTGGTGGATGCGTTGG
ACTCGGTGGCTGGAGCCACGGGCAATGTGGTCTTTCGAGGCGCTACGATGAAGGTCAAGAATGATGTGTCCAGTGGAATG
CAGCTTAACTTCTCCATGCGCACCACGGGGACGTTCCCTACGATGGCAGTGCAGATGACAGCAATCGGTGAAGAGTCTGG
TTCGCTTGATGAGATGCTGGCTAAAGTTGCGACTTTCTACGAGGACGAAGTCGATAACATGGTTGATGGCCTGACTAGCC
TTATGGAGCCAATGATCATGGCCGTGCTCGGGGTTCTGGTGGGCGGCTTGATCATCGCTATGTACCTTCCGATCTTCCAG
CTAGGTGCTGTCGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

90.123

100

0.901
  pilC Acinetobacter baylyi ADP1

60.591

100

0.607
  pilC Acinetobacter baumannii D1279779

60.494

100

0.605
  pilC Legionella pneumophila strain ERS1305867

52.778

97.778

0.516
  pilG Neisseria gonorrhoeae MS11

44.949

97.778

0.44
  pilG Neisseria meningitidis 44/76-A

44.949

97.778

0.44
  pilC Vibrio cholerae strain A1552

43.182

97.778

0.422
  pilC Vibrio campbellii strain DS40M4

40.909

97.778

0.4
  pilC Thermus thermophilus HB27

36.591

98.519

0.36

Multiple sequence alignment