Detailed information NTG0278781

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: C6Y50_RS11605
• Genome accession: NZ_CP027664
• Coordinates: 2456000..2456869 (+)
• Length: 289 a.a.
• NCBI ID: WP_106442876.1
• Uniprot ID: -
• Organism: Stutzerimonas stutzeri strain 1W1-1A
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2451000..2461869

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C6Y50_RS21505 (C6Y50_11595)	pilA/pilA1	2452317..2452754 (-)	438	WP_106442873.1	pilin	Machinery gene
C6Y50_RS11595 (C6Y50_11600)	pilB	2453074..2454777 (+)	1704	WP_106442874.1	type IV-A pilus assembly ATPase PilB	Machinery gene
C6Y50_RS11600 (C6Y50_11605)	pilC	2454780..2455997 (+)	1218	WP_106442875.1	type II secretion system F family protein	Machinery gene
C6Y50_RS11605 (C6Y50_11610)	pilD	2456000..2456869 (+)	870	WP_106442876.1	prepilin peptidase	Machinery gene
C6Y50_RS11610 (C6Y50_11615)	coaE	2457001..2457609 (+)	609	WP_106442877.1	dephospho-CoA kinase	-
C6Y50_RS11615 (C6Y50_11620)	yacG	2457606..2457803 (+)	198	WP_095460669.1	DNA gyrase inhibitor YacG	-
C6Y50_RS11620 (C6Y50_11625)	-	2457816..2458496 (-)	681	WP_013981946.1	energy-coupling factor ABC transporter permease	-
C6Y50_RS11625 (C6Y50_11630)	-	2458553..2459593 (-)	1041	WP_106442878.1	NADP(H)-dependent aldo-keto reductase	-
C6Y50_RS11630 (C6Y50_11635)	rplM	2460008..2460436 (+)	429	WP_003287302.1	50S ribosomal protein L13	-
C6Y50_RS11635 (C6Y50_11640)	rpsI	2460452..2460844 (+)	393	WP_013981948.1	30S ribosomal protein S9	-
C6Y50_RS11640 (C6Y50_11645)	petA	2461099..2461692 (+)	594	WP_013981949.1	ubiquinol-cytochrome c reductase iron-sulfur subunit	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32112.06 Da
• Isoelectric Point: 7.2177

>NTDB_id=278781 C6Y50_RS11605 WP_106442876.1 2456000..2456869(+) (pilD) [Stutzerimonas stutzeri strain 1W1-1A]
MGLIDFLASQVLAFVLSAAVLGLLVGSFLNVVIYRVPIMMQREWRMQAREYLEYPPEPIGERFNLLVPSSRCPHCGHRIR
AWENIPLVSWLALRGKCSSCQAPISCRYPLVELACGVLSGYVAWHFGFSWQAGAMLLLTWGLLAMSMIDVDHQLLPDSLV
LPLLWLGLIANSFALFASLEDALWGAIAGYLSLWSVYWLFKLVTGKEGMGYGDFKLLAMLGVWGGWQVLPLTILLSSVVG
AVLGSILLRVQRAESSTPIPFGPYLAIAGWIALLWGDRITESYLQFARF

Nucleotide

• Length: 870 bp

>NTDB_id=278781 C6Y50_RS11605 WP_106442876.1 2456000..2456869(+) (pilD) [Stutzerimonas stutzeri strain 1W1-1A]
ATGGGTTTGATTGATTTCTTGGCCAGCCAAGTGCTGGCCTTTGTTTTGTCTGCTGCAGTGCTCGGTCTGCTGGTTGGCAG
CTTTCTCAATGTCGTCATCTACCGTGTGCCGATCATGATGCAGCGCGAATGGCGCATGCAGGCGCGGGAATATTTGGAGT
ATCCGCCCGAGCCAATTGGGGAGCGTTTCAATCTACTGGTGCCGAGTTCACGCTGCCCTCACTGCGGTCATCGTATCCGT
GCCTGGGAGAACATTCCCTTGGTCAGCTGGCTGGCGCTGCGTGGAAAGTGCTCGTCTTGTCAGGCGCCGATCAGCTGTCG
ATATCCGTTGGTTGAGCTGGCGTGTGGCGTGCTATCCGGATACGTGGCATGGCATTTCGGTTTTTCCTGGCAGGCAGGGG
CGATGCTTCTGCTGACCTGGGGGTTGCTGGCGATGAGCATGATCGATGTCGATCATCAGTTGCTGCCTGACTCGCTCGTG
CTGCCGCTCTTATGGTTAGGGTTGATTGCCAACAGCTTTGCTCTGTTCGCCTCTCTCGAGGATGCGCTGTGGGGGGCGAT
AGCCGGTTACCTGAGCCTATGGTCCGTTTATTGGCTGTTCAAGCTGGTCACAGGCAAAGAGGGTATGGGCTACGGCGATT
TCAAGCTGCTGGCGATGCTTGGTGTCTGGGGCGGCTGGCAGGTTCTGCCCCTCACTATCTTGCTGTCTTCGGTGGTCGGC
GCCGTTCTTGGCAGTATTTTGCTGAGGGTGCAGCGGGCTGAAAGCAGTACGCCCATTCCGTTCGGGCCGTATCTGGCGAT
AGCGGGGTGGATTGCGTTGCTTTGGGGCGACCGAATTACCGAAAGCTACCTCCAGTTCGCTCGCTTCTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	57.455	95.156	0.547
pilD	Vibrio campbellii strain DS40M4	57.299	94.81	0.543
pilD	Acinetobacter baumannii D1279779	50.352	98.27	0.495
pilD	Acinetobacter nosocomialis M2	50.352	98.27	0.495
pilD	Neisseria gonorrhoeae MS11	53.232	91.003	0.484