Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | GTNG_RS15990 | Genome accession | NC_009328 |
| Coordinates | 3210761..3211108 (-) | Length | 115 a.a. |
| NCBI ID | WP_008880386.1 | Uniprot ID | A4IT00 |
| Organism | Geobacillus thermodenitrificans NG80-2 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 3205761..3216108
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GTNG_RS15975 (GTNG_3106) | - | 3207313..3209196 (-) | 1884 | WP_011888249.1 | peptidoglycan-binding protein | - |
| GTNG_RS15980 (GTNG_3107) | - | 3209507..3210007 (-) | 501 | WP_029761383.1 | hypothetical protein | - |
| GTNG_RS15985 (GTNG_3108) | - | 3210221..3210631 (+) | 411 | WP_029761384.1 | helix-turn-helix domain-containing protein | - |
| GTNG_RS15990 (GTNG_3109) | ssbB | 3210761..3211108 (-) | 348 | WP_008880386.1 | single-stranded DNA-binding protein | Machinery gene |
| GTNG_RS15995 (GTNG_3111) | - | 3211392..3211832 (+) | 441 | WP_011888252.1 | YwpF-like family protein | - |
| GTNG_RS16000 (GTNG_3112) | - | 3212019..3212690 (-) | 672 | WP_008880388.1 | class D sortase | - |
| GTNG_RS16005 (GTNG_3113) | - | 3212697..3213629 (-) | 933 | WP_041264913.1 | processed acidic surface protein | - |
| GTNG_RS16010 (GTNG_3114) | - | 3213775..3215151 (-) | 1377 | WP_011888254.1 | aspartate kinase | - |
| GTNG_RS16015 (GTNG_3115) | - | 3215302..3215736 (-) | 435 | WP_008880391.1 | DUF1284 domain-containing protein | - |
Sequence
Protein
Download Length: 115 a.a. Molecular weight: 12957.77 Da Isoelectric Point: 8.5040
>NTDB_id=27823 GTNG_RS15990 WP_008880386.1 3210761..3211108(-) (ssbB) [Geobacillus thermodenitrificans NG80-2]
MINQVVLVGRLTKDPELRYTAEGTAVTTVILAVARNFRNAEGGIDADFVPCVLWRKTAEHTAHYCQKGSMVAVTGRIQTR
RYENKDGQRVYVTEVVADSVQFLHSGKVREWPEHV
MINQVVLVGRLTKDPELRYTAEGTAVTTVILAVARNFRNAEGGIDADFVPCVLWRKTAEHTAHYCQKGSMVAVTGRIQTR
RYENKDGQRVYVTEVVADSVQFLHSGKVREWPEHV
Nucleotide
Download Length: 348 bp
>NTDB_id=27823 GTNG_RS15990 WP_008880386.1 3210761..3211108(-) (ssbB) [Geobacillus thermodenitrificans NG80-2]
ATGATCAATCAAGTCGTACTTGTCGGCCGATTGACGAAGGATCCAGAGCTTCGTTACACGGCCGAAGGGACGGCCGTTAC
AACCGTGATCTTGGCGGTAGCAAGAAATTTTCGCAACGCGGAAGGGGGGATTGATGCTGACTTCGTTCCGTGTGTCCTAT
GGCGGAAAACGGCAGAGCATACTGCCCATTATTGCCAAAAAGGATCGATGGTGGCGGTAACGGGTAGAATCCAGACGCGC
CGTTATGAAAACAAAGACGGCCAGCGCGTCTATGTGACGGAAGTCGTAGCCGATTCAGTTCAGTTTCTCCACTCCGGCAA
AGTGCGAGAATGGCCGGAGCACGTCTAG
ATGATCAATCAAGTCGTACTTGTCGGCCGATTGACGAAGGATCCAGAGCTTCGTTACACGGCCGAAGGGACGGCCGTTAC
AACCGTGATCTTGGCGGTAGCAAGAAATTTTCGCAACGCGGAAGGGGGGATTGATGCTGACTTCGTTCCGTGTGTCCTAT
GGCGGAAAACGGCAGAGCATACTGCCCATTATTGCCAAAAAGGATCGATGGTGGCGGTAACGGGTAGAATCCAGACGCGC
CGTTATGAAAACAAAGACGGCCAGCGCGTCTATGTGACGGAAGTCGTAGCCGATTCAGTTCAGTTTCTCCACTCCGGCAA
AGTGCGAGAATGGCCGGAGCACGTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
67.273 |
95.652 |
0.643 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
62.5 |
90.435 |
0.565 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
60.952 |
91.304 |
0.557 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
47.368 |
99.13 |
0.47 |
| ssbA | Streptococcus mutans UA159 |
44.737 |
99.13 |
0.443 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
43.86 |
99.13 |
0.435 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
43.86 |
99.13 |
0.435 |
| ssbB/cilA | Streptococcus mitis SK321 |
42.982 |
99.13 |
0.426 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
42.982 |
99.13 |
0.426 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
42.982 |
99.13 |
0.426 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
42.982 |
99.13 |
0.426 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
41.346 |
90.435 |
0.374 |