Detailed information NTG0027500

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: SSA_RS01090
• Genome accession: NC_009009
• Coordinates: 190478..190912 (+)
• Length: 144 a.a.
• NCBI ID: WP_033179099.1
• Uniprot ID: -
• Organism: Streptococcus sanguinis SK36
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 185478..195912

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SSA_RS01065 (SSA_0182)	-	186361..187467 (+)	1107	WP_033179098.1	glycosyl hydrolase family 8	-
SSA_RS01070 (SSA_0183)	-	187786..188166 (+)	381	WP_011836357.1	DUF1033 family protein	-
SSA_RS01075 (SSA_0184)	comYA	188296..189237 (+)	942	WP_011836358.1	competence type IV pilus ATPase ComGA	Machinery gene
SSA_RS01080 (SSA_0185)	comYB	189167..190201 (+)	1035	WP_260469263.1	competence type IV pilus assembly protein ComGB	Machinery gene
SSA_RS01085 (SSA_0186)	comYC	190201..190518 (+)	318	WP_011836360.1	competence type IV pilus major pilin ComGC	Machinery gene
SSA_RS01090 (SSA_0187)	comYD	190478..190912 (+)	435	WP_033179099.1	competence type IV pilus minor pilin ComGD	Machinery gene
SSA_RS01095 (SSA_0188)	comGE/cglE	190878..191171 (+)	294	WP_033179100.1	competence type IV pilus minor pilin ComGE	Machinery gene
SSA_RS01100 (SSA_0189)	comGF/cglF	191155..191583 (+)	429	WP_011836363.1	competence type IV pilus minor pilin ComGF	Machinery gene
SSA_RS01105 (SSA_0190)	comGG	191573..191965 (+)	393	WP_033179101.1	competence type IV pilus minor pilin ComGG	-
SSA_RS01110 (SSA_0191)	comYH	192047..193012 (+)	966	WP_002910847.1	class I SAM-dependent methyltransferase	Machinery gene
SSA_RS01115 (SSA_0192)	-	193049..194242 (+)	1194	WP_002911070.1	acetate kinase	-
SSA_RS01120 (SSA_0193)	-	194386..195135 (+)	750	WP_033179102.1	CPBP family intramembrane glutamic endopeptidase	-
SSA_RS01125 (SSA_0195)	-	195253..195891 (+)	639	WP_011836366.1	type II CAAX prenyl endopeptidase Rce1 family protein	-

Sequence

Protein

• Length: 144 a.a.
• Molecular weight: 16365.81 Da
• Isoelectric Point: 9.3997

>NTDB_id=27500 SSA_RS01090 WP_033179099.1 190478..190912(+) (comYD) [Streptococcus sanguinis SK36]
MENTVAKLKRLPIKAFTLLESLLVLFVVSFLLLGLSGSVRAGFNQVQEQLFFLEFERLYQETQRLSLAGHEKLSLKISGR
QISNGYQELDFPQTLQEHEQQVIQFDRAGGNSSLGKIIFQTEDRTVVYQLYMGNGKFKKTTASS

Nucleotide

• Length: 435 bp

>NTDB_id=27500 SSA_RS01090 WP_033179099.1 190478..190912(+) (comYD) [Streptococcus sanguinis SK36]
ATGGAAAACACAGTGGCGAAACTCAAGCGGTTGCCAATTAAGGCTTTTACACTGCTGGAAAGTCTCCTCGTTCTTTTTGT
CGTTAGTTTTCTACTACTAGGCTTATCTGGCTCAGTGAGGGCTGGCTTCAATCAGGTTCAAGAGCAACTCTTCTTTTTAG
AGTTTGAGAGGCTCTACCAGGAGACGCAGAGGTTGAGCTTAGCCGGGCATGAGAAGCTTTCTCTCAAGATTTCAGGACGG
CAGATTTCCAATGGCTATCAAGAACTGGATTTTCCACAAACTTTGCAGGAACATGAGCAGCAGGTCATTCAGTTTGACCG
GGCTGGTGGGAATTCATCACTCGGCAAGATTATTTTTCAGACGGAGGACAGGACAGTTGTTTACCAGCTTTATATGGGCA
ATGGCAAGTTTAAAAAGACGACAGCTTCAAGCTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus gordonii str. Challis substr. CH1	58.865	97.917	0.576
comGD/cglD	Streptococcus mitis NCTC 12261	58.333	91.667	0.535
comGD/cglD	Streptococcus pneumoniae Rx1	59.055	88.194	0.521
comGD/cglD	Streptococcus pneumoniae D39	59.055	88.194	0.521
comGD/cglD	Streptococcus pneumoniae R6	59.055	88.194	0.521
comGD/cglD	Streptococcus mitis SK321	59.055	88.194	0.521
comGD/cglD	Streptococcus pneumoniae TIGR4	58.268	88.194	0.514
comYD	Streptococcus mutans UA140	48.837	89.583	0.437
comYD	Streptococcus mutans UA159	48.837	89.583	0.437
comGD	Lactococcus lactis subsp. cremoris KW2	41.221	90.972	0.375