Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   C3496_RS16090 Genome accession   NZ_CP026608
Coordinates   3117077..3117412 (+) Length   111 a.a.
NCBI ID   WP_136444832.1    Uniprot ID   A0A4V3X0T3
Organism   Bacillus anthracis strain HDZK-BYSB7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3112077..3122412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3496_RS16065 (C3496_16775) - 3112341..3113102 (-) 762 WP_029439504.1 hypothetical protein -
  C3496_RS16070 (C3496_16780) - 3113212..3113859 (+) 648 WP_000163595.1 HD domain-containing protein -
  C3496_RS16075 (C3496_16785) - 3113856..3115751 (+) 1896 WP_000783201.1 ABC-F family ATP-binding cassette domain-containing protein -
  C3496_RS16080 (C3496_16790) - 3115827..3116558 (+) 732 WP_001260645.1 Bax inhibitor-1/YccA family protein -
  C3496_RS16085 (C3496_16795) - 3116664..3116918 (+) 255 WP_000975125.1 DUF4318 domain-containing protein -
  C3496_RS16090 (C3496_16800) ssbA 3117077..3117412 (+) 336 WP_136444832.1 single-stranded DNA-binding protein Machinery gene
  C3496_RS16095 (C3496_16805) - 3117961..3119088 (+) 1128 WP_136444831.1 conserved virulence factor C family protein -
  C3496_RS16100 (C3496_16810) - 3119092..3119475 (+) 384 WP_183145172.1 thiol-disulfide oxidoreductase DCC family protein -
  C3496_RS16105 (C3496_16815) - 3119559..3119993 (+) 435 WP_000063713.1 BrxA/BrxB family bacilliredoxin -
  C3496_RS16110 (C3496_16820) - 3120043..3120819 (+) 777 WP_071727414.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12741.59 Da        Isoelectric Point: 9.4344

>NTDB_id=270710 C3496_RS16090 WP_136444832.1 3117077..3117412(+) (ssbA) [Bacillus anthracis strain HDZK-BYSB7]
MMNRVVLIGRLTKEPELYYTKQGAAYARICIAVNRGFRNSLGEQQVDFINCVVWRKSAENVTEYCKKGALVGITGRIQTS
NYDDEQGKRIYRTEVVIESITFLERRREGAS

Nucleotide


Download         Length: 336 bp        

>NTDB_id=270710 C3496_RS16090 WP_136444832.1 3117077..3117412(+) (ssbA) [Bacillus anthracis strain HDZK-BYSB7]
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAACAAGGCGCCGCTTATGC
AAGAATATGTATTGCGGTGAATAGAGGATTTCGAAATAGTTTAGGTGAACAACAAGTCGATTTTATTAATTGTGTCGTTT
GGCGAAAATCGGCTGAGAATGTAACTGAATATTGTAAGAAGGGGGCACTTGTTGGGATTACAGGGCGTATTCAGACGAGT
AATTACGATGATGAACAAGGCAAGAGAATATATAGAACTGAAGTTGTGATTGAGAGTATTACCTTTTTGGAGAGAAGGCG
GGAGGGGGCATCGTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4V3X0T3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.491

95.495

0.559
  ssb Latilactobacillus sakei subsp. sakei 23K

55.66

95.495

0.532
  ssbB Bacillus subtilis subsp. subtilis str. 168

50.893

100

0.514
  ssbB Lactococcus lactis subsp. cremoris KW2

44.762

94.595

0.423
  ssbB Streptococcus sobrinus strain NIDR 6715-7

42.727

99.099

0.423
  ssbB/cilA Streptococcus mitis NCTC 12261

40

99.099

0.396
  ssbB/cilA Streptococcus pneumoniae TIGR4

40

99.099

0.396
  ssbB/cilA Streptococcus pneumoniae Rx1

39.091

99.099

0.387
  ssbB/cilA Streptococcus pneumoniae D39

39.091

99.099

0.387
  ssbB/cilA Streptococcus pneumoniae R6

39.091

99.099

0.387
  ssbB/cilA Streptococcus mitis SK321

39.091

99.099

0.387
  ssbA Streptococcus mutans UA159

39.091

99.099

0.387

Multiple sequence alignment