Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   BV11031_RS21425 Genome accession   NZ_CP026362
Coordinates   4047136..4047477 (+) Length   113 a.a.
NCBI ID   WP_010328864.1    Uniprot ID   -
Organism   Bacillus vallismortis strain DSM 11031     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4042136..4052477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV11031_RS21395 (BV11031_21365) flhP 4042956..4043765 (+) 810 WP_010328870.1 flagellar hook-basal body complex protein FlhP -
  BV11031_RS21400 (BV11031_21370) - 4043786..4044850 (-) 1065 WP_010328869.1 tetratricopeptide repeat protein -
  BV11031_RS21405 (BV11031_21375) fabZ 4045043..4045468 (+) 426 WP_010328868.1 3-hydroxyacyl-ACP dehydratase FabZ -
  BV11031_RS21410 (BV11031_21380) mscL 4045542..4045934 (+) 393 WP_010328867.1 large conductance mechanosensitive channel protein MscL -
  BV11031_RS21415 (BV11031_21385) - 4046091..4046501 (-) 411 WP_010328866.1 YwpF-like family protein -
  BV11031_RS21420 (BV11031_21390) - 4046676..4047059 (+) 384 WP_010328865.1 hypothetical protein -
  BV11031_RS21425 (BV11031_21395) ssbB 4047136..4047477 (+) 342 WP_010328864.1 single-stranded DNA-binding protein SsbB Machinery gene
  BV11031_RS21430 (BV11031_21400) glcR 4047702..4048478 (+) 777 WP_010328863.1 transcriptional regulator GlcR -
  BV11031_RS21435 (BV11031_21405) - 4048484..4049341 (+) 858 WP_010328862.1 Cof-type HAD-IIB family hydrolase -
  BV11031_RS21440 (BV11031_21410) - 4049462..4052230 (-) 2769 WP_010328860.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12452.07 Da        Isoelectric Point: 7.8150

>NTDB_id=268867 BV11031_RS21425 WP_010328864.1 4047136..4047477(+) (ssbB) [Bacillus vallismortis strain DSM 11031]
MFNQVMLVGRLTKDPELRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENADGVNVYVTEVLADTVRFMDSKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=268867 BV11031_RS21425 WP_010328864.1 4047136..4047477(+) (ssbB) [Bacillus vallismortis strain DSM 11031]
ATGTTCAATCAGGTCATGCTTGTCGGCCGTCTTACAAAAGATCCTGAGCTTCGCTACACTTCTGCCGGAGCGGCAGTTGC
ACACGTTACGCTCGCGGTAAACCGCAGTTTCAAGAATGCTTCAGGTGAAATCGAAGCCGATTACGTCAACTGCACGCTTT
GGAGAAAAACCGCTGAAAACACGGCGCTATATTGCCAAAAAGGTTCTCTCGTTGGCGTTAGCGGACGGATTCAGACAAGG
AGCTATGAAAACGCAGACGGCGTTAACGTGTATGTAACGGAAGTGTTGGCTGACACTGTTCGTTTTATGGACTCTAAACC
CCGGGAAAAAGCTGCCGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

96.46

100

0.965
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.151

93.805

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

59.434

93.805

0.558
  ssbB Streptococcus sobrinus strain NIDR 6715-7

49.057

93.805

0.46
  ssbA Streptococcus mutans UA159

47.17

93.805

0.442
  ssbB/cilA Streptococcus mitis NCTC 12261

47.17

93.805

0.442
  ssbB/cilA Streptococcus pneumoniae TIGR4

47.17

93.805

0.442
  ssbB/cilA Streptococcus pneumoniae Rx1

46.226

93.805

0.434
  ssbB/cilA Streptococcus pneumoniae D39

46.226

93.805

0.434
  ssbB/cilA Streptococcus pneumoniae R6

46.226

93.805

0.434
  ssbB/cilA Streptococcus mitis SK321

46.226

93.805

0.434
  ssbB Lactococcus lactis subsp. cremoris KW2

43.81

92.92

0.407

Multiple sequence alignment