Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   BAOM_RS22435 Genome accession   NZ_CP026095
Coordinates   4568695..4569057 (-) Length   120 a.a.
NCBI ID   WP_119115756.1    Uniprot ID   -
Organism   Peribacillus asahii strain OM18     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4563695..4574057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAOM_RS22420 (BAOM_4828) - 4564191..4567055 (+) 2865 WP_127762179.1 DEAD/DEAH box helicase -
  BAOM_RS22425 (BAOM_4831) - 4567902..4568189 (-) 288 WP_127762180.1 hypothetical protein -
  BAOM_RS22430 (BAOM_4832) - 4568470..4568673 (-) 204 WP_127762181.1 hypothetical protein -
  BAOM_RS22435 (BAOM_4833) ssbB 4568695..4569057 (-) 363 WP_119115756.1 single-stranded DNA-binding protein Machinery gene
  BAOM_RS22440 (BAOM_4835) - 4569377..4569811 (+) 435 WP_127762182.1 YwpF family protein -
  BAOM_RS22445 (BAOM_4836) - 4569941..4570243 (-) 303 WP_127762183.1 hypothetical protein -
  BAOM_RS22450 (BAOM_4837) fabZ 4570356..4570787 (-) 432 WP_119115758.1 3-hydroxyacyl-ACP dehydratase FabZ -
  BAOM_RS22455 (BAOM_4838) - 4570821..4571072 (-) 252 WP_127762184.1 DNA-directed RNA polymerase subunit beta -
  BAOM_RS22460 (BAOM_4839) - 4571180..4572013 (-) 834 WP_127762185.1 flagellar hook-basal body protein -
  BAOM_RS22465 (BAOM_4840) - 4572049..4572885 (-) 837 WP_127762186.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13646.56 Da        Isoelectric Point: 9.3998

>NTDB_id=267089 BAOM_RS22435 WP_119115756.1 4568695..4569057(-) (ssbB) [Peribacillus asahii strain OM18]
MINQVTLVGRLTKDPELRYTADGKAVSNVTIAVNRPFRNQAGEYDADFVQCTLWRKTAENTVQYCRRGSMIGITGRIQTR
RYENQEGKQVYVTEVVAEMVQFVGPRKLDVPKQAYESIGL

Nucleotide


Download         Length: 363 bp        

>NTDB_id=267089 BAOM_RS22435 WP_119115756.1 4568695..4569057(-) (ssbB) [Peribacillus asahii strain OM18]
TTGATTAACCAAGTAACCCTGGTTGGACGCTTGACGAAAGATCCTGAGTTGCGGTACACAGCAGATGGAAAAGCTGTTTC
GAATGTAACGATTGCGGTGAATCGTCCTTTTCGAAATCAAGCTGGTGAATACGATGCTGATTTTGTGCAATGCACGCTAT
GGAGGAAAACGGCTGAAAATACGGTCCAATATTGTCGGCGCGGCTCAATGATTGGGATTACTGGAAGAATCCAGACACGT
CGTTATGAGAATCAAGAGGGTAAGCAGGTATATGTAACAGAAGTAGTGGCTGAAATGGTTCAGTTTGTTGGACCGAGGAA
GTTAGACGTTCCAAAGCAAGCATATGAGTCTATTGGCTTGTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

66.038

88.333

0.583
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.879

89.167

0.525
  ssb Latilactobacillus sakei subsp. sakei 23K

52.83

88.333

0.467
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.283

88.333

0.4
  ssbB/cilA Streptococcus mitis NCTC 12261

45.283

88.333

0.4
  ssbB/cilA Streptococcus pneumoniae TIGR4

45.283

88.333

0.4
  ssbB/cilA Streptococcus pneumoniae Rx1

44.34

88.333

0.392
  ssbB/cilA Streptococcus pneumoniae D39

44.34

88.333

0.392
  ssbB/cilA Streptococcus pneumoniae R6

44.34

88.333

0.392
  ssbB/cilA Streptococcus mitis SK321

44.34

88.333

0.392
  ssbA Streptococcus mutans UA159

43.396

88.333

0.383
  ssb Vibrio cholerae strain A1552

40.179

93.333

0.375

Multiple sequence alignment