Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | RK88_RS03485 | Genome accession | NZ_CP026071 |
| Coordinates | 613440..613751 (+) | Length | 103 a.a. |
| NCBI ID | WP_000472257.1 | Uniprot ID | A0A115HMG3 |
| Organism | Staphylococcus aureus strain FDAARGOS_30 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 608440..618751
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RK88_RS03455 (RK88_003455) | - | 609223..609426 (+) | 204 | WP_000087561.1 | YqgQ family protein | - |
| RK88_RS03460 (RK88_003460) | - | 609423..610409 (+) | 987 | WP_000161314.1 | ROK family glucokinase | - |
| RK88_RS03465 (RK88_003465) | - | 610409..610738 (+) | 330 | WP_001018871.1 | MTH1187 family thiamine-binding protein | - |
| RK88_RS03470 (RK88_003470) | - | 610735..611358 (+) | 624 | WP_001223008.1 | MBL fold metallo-hydrolase | - |
| RK88_RS03475 (RK88_003475) | comGA | 611410..612384 (+) | 975 | WP_000697220.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| RK88_RS03480 (RK88_003480) | comGB | 612356..613426 (+) | 1071 | WP_000776412.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| RK88_RS03485 (RK88_003485) | comGC | 613440..613751 (+) | 312 | WP_000472257.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| RK88_RS03490 (RK88_003490) | comGD | 613729..614175 (+) | 447 | WP_001791207.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| RK88_RS03495 (RK88_003495) | comGE | 614162..614461 (+) | 300 | WP_000844413.1 | hypothetical protein | Machinery gene |
| RK88_RS03500 (RK88_003500) | comGF | 614379..614876 (+) | 498 | WP_001794055.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| RK88_RS03505 (RK88_003505) | - | 614973..615119 (+) | 147 | WP_001789879.1 | hypothetical protein | - |
| RK88_RS03510 (RK88_003510) | - | 615109..615633 (+) | 525 | WP_001015125.1 | shikimate kinase | - |
| RK88_RS03515 (RK88_003515) | gcvT | 615792..616883 (+) | 1092 | WP_000093347.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| RK88_RS03520 (RK88_003520) | gcvPA | 616903..618249 (+) | 1347 | WP_000019697.1 | aminomethyl-transferring glycine dehydrogenase subunit GcvPA | - |
Sequence
Protein
Download Length: 103 a.a. Molecular weight: 11373.39 Da Isoelectric Point: 7.8600
>NTDB_id=266559 RK88_RS03485 WP_000472257.1 613440..613751(+) (comGC) [Staphylococcus aureus strain FDAARGOS_30]
MFKFLKKTQAFTLIEMLLVLLIISLLLILIIPNIAKQTAHIQSTGCNAQVKMVNSQIEAYALKHNRNPSSIEDLIADGFI
KEEQKTCKSGETITISNGEAVAN
MFKFLKKTQAFTLIEMLLVLLIISLLLILIIPNIAKQTAHIQSTGCNAQVKMVNSQIEAYALKHNRNPSSIEDLIADGFI
KEEQKTCKSGETITISNGEAVAN
Nucleotide
Download Length: 312 bp
>NTDB_id=266559 RK88_RS03485 WP_000472257.1 613440..613751(+) (comGC) [Staphylococcus aureus strain FDAARGOS_30]
ATGTTTAAATTTCTTAAGAAAACTCAAGCGTTTACATTGATAGAGATGCTATTAGTGTTATTAATCATCAGTTTATTATT
AATTTTAATCATTCCAAATATTGCTAAACAAACTGCTCACATACAATCAACAGGTTGTAATGCACAGGTAAAAATGGTTA
ATAGTCAAATTGAAGCGTATGCATTGAAACATAATAGAAATCCATCGTCTATTGAAGACTTAATTGCAGATGGTTTTATA
AAAGAAGAGCAAAAGACATGTAAATCAGGAGAGACAATAACAATTAGTAATGGAGAAGCAGTTGCAAATTAG
ATGTTTAAATTTCTTAAGAAAACTCAAGCGTTTACATTGATAGAGATGCTATTAGTGTTATTAATCATCAGTTTATTATT
AATTTTAATCATTCCAAATATTGCTAAACAAACTGCTCACATACAATCAACAGGTTGTAATGCACAGGTAAAAATGGTTA
ATAGTCAAATTGAAGCGTATGCATTGAAACATAATAGAAATCCATCGTCTATTGAAGACTTAATTGCAGATGGTTTTATA
AAAGAAGAGCAAAAGACATGTAAATCAGGAGAGACAATAACAATTAGTAATGGAGAAGCAGTTGCAAATTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Staphylococcus aureus N315 |
99.029 |
100 |
0.99 |
| comGC | Staphylococcus aureus MW2 |
99.029 |
100 |
0.99 |
| comGC/cglC | Streptococcus mitis SK321 |
48.039 |
99.029 |
0.476 |
| comGC/cglC | Streptococcus pneumoniae R6 |
47.059 |
99.029 |
0.466 |
| comGC/cglC | Streptococcus pneumoniae D39 |
47.059 |
99.029 |
0.466 |
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
47.059 |
99.029 |
0.466 |
| comGC/cglC | Streptococcus pneumoniae Rx1 |
47.059 |
99.029 |
0.466 |
| comGC/cglC | Streptococcus mitis NCTC 12261 |
52.326 |
83.495 |
0.437 |
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
42.857 |
95.146 |
0.408 |
| comYC | Streptococcus suis isolate S10 |
50 |
75.728 |
0.379 |
| comYC | Streptococcus mutans UA140 |
50 |
73.786 |
0.369 |
| comYC | Streptococcus mutans UA159 |
50 |
73.786 |
0.369 |
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
41.758 |
88.35 |
0.369 |
| comGC | Lactococcus lactis subsp. cremoris KW2 |
46.341 |
79.612 |
0.369 |