Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   RK88_RS03490 Genome accession   NZ_CP026071
Coordinates   613729..614175 (+) Length   148 a.a.
NCBI ID   WP_001791207.1    Uniprot ID   -
Organism   Staphylococcus aureus strain FDAARGOS_30     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 608729..619175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RK88_RS03455 (RK88_003455) - 609223..609426 (+) 204 WP_000087561.1 YqgQ family protein -
  RK88_RS03460 (RK88_003460) - 609423..610409 (+) 987 WP_000161314.1 ROK family glucokinase -
  RK88_RS03465 (RK88_003465) - 610409..610738 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  RK88_RS03470 (RK88_003470) - 610735..611358 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  RK88_RS03475 (RK88_003475) comGA 611410..612384 (+) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  RK88_RS03480 (RK88_003480) comGB 612356..613426 (+) 1071 WP_000776412.1 competence type IV pilus assembly protein ComGB Machinery gene
  RK88_RS03485 (RK88_003485) comGC 613440..613751 (+) 312 WP_000472257.1 competence type IV pilus major pilin ComGC Machinery gene
  RK88_RS03490 (RK88_003490) comGD 613729..614175 (+) 447 WP_001791207.1 competence type IV pilus minor pilin ComGD Machinery gene
  RK88_RS03495 (RK88_003495) comGE 614162..614461 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  RK88_RS03500 (RK88_003500) comGF 614379..614876 (+) 498 WP_001794055.1 competence type IV pilus minor pilin ComGF Machinery gene
  RK88_RS03505 (RK88_003505) - 614973..615119 (+) 147 WP_001789879.1 hypothetical protein -
  RK88_RS03510 (RK88_003510) - 615109..615633 (+) 525 WP_001015125.1 shikimate kinase -
  RK88_RS03515 (RK88_003515) gcvT 615792..616883 (+) 1092 WP_000093347.1 glycine cleavage system aminomethyltransferase GcvT -
  RK88_RS03520 (RK88_003520) gcvPA 616903..618249 (+) 1347 WP_000019697.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17113.28 Da        Isoelectric Point: 10.3312

>NTDB_id=266560 RK88_RS03490 WP_001791207.1 613729..614175(+) (comGD) [Staphylococcus aureus strain FDAARGOS_30]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTLTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=266560 RK88_RS03490 WP_001791207.1 613729..614175(+) (comGD) [Staphylococcus aureus strain FDAARGOS_30]
ATGGAGAAGCAGTTGCAAATTAGAAAACAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACATTGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAACTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGATAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

98.649

100

0.986
  comGD Staphylococcus aureus N315

98.649

100

0.986

Multiple sequence alignment