Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | C2I17_RS16660 | Genome accession | NZ_CP026040 |
| Coordinates | 3508512..3508853 (+) | Length | 113 a.a. |
| NCBI ID | WP_095329937.1 | Uniprot ID | - |
| Organism | Niallia circulans strain PK3_15 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 3503512..3513853
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C2I17_RS16645 (C2I17_16480) | - | 3503917..3505599 (-) | 1683 | WP_249877847.1 | methyl-accepting chemotaxis protein | - |
| C2I17_RS16650 (C2I17_16485) | - | 3505836..3506342 (+) | 507 | WP_095329935.1 | cupin domain-containing protein | - |
| C2I17_RS16655 (C2I17_16490) | - | 3506507..3508243 (+) | 1737 | WP_123258261.1 | phospho-sugar mutase | - |
| C2I17_RS16660 (C2I17_16495) | ssbB | 3508512..3508853 (+) | 342 | WP_095329937.1 | single-stranded DNA-binding protein | Machinery gene |
| C2I17_RS16665 | - | 3508868..3509014 (+) | 147 | WP_164463704.1 | hypothetical protein | - |
| C2I17_RS16670 (C2I17_16500) | - | 3509249..3509395 (-) | 147 | WP_249877848.1 | anti-repressor SinI family protein | - |
| C2I17_RS16675 (C2I17_16505) | - | 3509742..3510488 (+) | 747 | WP_249877849.1 | WecB/TagA/CpsF family glycosyltransferase | - |
Sequence
Protein
Download Length: 113 a.a. Molecular weight: 12901.63 Da Isoelectric Point: 8.4703
>NTDB_id=265934 C2I17_RS16660 WP_095329937.1 3508512..3508853(+) (ssbB) [Niallia circulans strain PK3_15]
MINQVTLVGRLTKDPELRVTQEGTSIVHVTVAVNRNYKNQAGDYDADFVQCTFWNKVAENTAQYCHKGSLVGVVGRIQTR
NYENQERKKVYVTEVIAESVRFLDPKKLEQTIP
MINQVTLVGRLTKDPELRVTQEGTSIVHVTVAVNRNYKNQAGDYDADFVQCTFWNKVAENTAQYCHKGSLVGVVGRIQTR
NYENQERKKVYVTEVIAESVRFLDPKKLEQTIP
Nucleotide
Download Length: 342 bp
>NTDB_id=265934 C2I17_RS16660 WP_095329937.1 3508512..3508853(+) (ssbB) [Niallia circulans strain PK3_15]
ATGATCAATCAAGTTACTTTAGTAGGAAGGCTAACGAAAGATCCAGAACTGCGAGTAACACAAGAAGGAACTTCTATTGT
CCATGTGACTGTTGCAGTAAATAGAAACTACAAGAATCAAGCTGGTGATTATGATGCAGATTTTGTGCAATGTACCTTTT
GGAATAAGGTAGCGGAAAATACAGCTCAGTATTGTCATAAAGGCTCTCTAGTTGGAGTCGTTGGCCGAATACAGACAAGA
AACTATGAAAATCAAGAGCGGAAAAAGGTCTATGTAACAGAAGTTATTGCTGAATCCGTACGTTTCTTGGACCCTAAAAA
ACTAGAACAAACCATTCCTTAA
ATGATCAATCAAGTTACTTTAGTAGGAAGGCTAACGAAAGATCCAGAACTGCGAGTAACACAAGAAGGAACTTCTATTGT
CCATGTGACTGTTGCAGTAAATAGAAACTACAAGAATCAAGCTGGTGATTATGATGCAGATTTTGTGCAATGTACCTTTT
GGAATAAGGTAGCGGAAAATACAGCTCAGTATTGTCATAAAGGCTCTCTAGTTGGAGTCGTTGGCCGAATACAGACAAGA
AACTATGAAAATCAAGAGCGGAAAAAGGTCTATGTAACAGAAGTTATTGCTGAATCCGTACGTTTCTTGGACCCTAAAAA
ACTAGAACAAACCATTCCTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
65.455 |
97.345 |
0.637 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
93.805 |
0.558 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
52.83 |
93.805 |
0.496 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
46.226 |
93.805 |
0.434 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
43.396 |
93.805 |
0.407 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
43.396 |
93.805 |
0.407 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
42.453 |
93.805 |
0.398 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
42.453 |
93.805 |
0.398 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
42.453 |
93.805 |
0.398 |
| ssbB/cilA | Streptococcus mitis SK321 |
42.453 |
93.805 |
0.398 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
42.857 |
92.92 |
0.398 |
| ssbA | Streptococcus mutans UA159 |
41.509 |
93.805 |
0.389 |