Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | C2H98_RS20370 | Genome accession | NZ_CP026033 |
| Coordinates | 4251392..4251733 (+) | Length | 113 a.a. |
| NCBI ID | WP_095329937.1 | Uniprot ID | - |
| Organism | Niallia circulans strain PK3_138 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 4246392..4256733
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C2H98_RS20355 (C2H98_20320) | - | 4246797..4248479 (-) | 1683 | WP_164464096.1 | methyl-accepting chemotaxis protein | - |
| C2H98_RS20360 (C2H98_20325) | - | 4248717..4249223 (+) | 507 | WP_095329935.1 | cupin domain-containing protein | - |
| C2H98_RS20365 (C2H98_20330) | - | 4249388..4251124 (+) | 1737 | WP_123260547.1 | phospho-sugar mutase | - |
| C2H98_RS20370 (C2H98_20335) | ssbB | 4251392..4251733 (+) | 342 | WP_095329937.1 | single-stranded DNA-binding protein | Machinery gene |
| C2H98_RS25825 | - | 4251748..4251894 (+) | 147 | WP_164463704.1 | hypothetical protein | - |
| C2H98_RS20375 (C2H98_20340) | - | 4252129..4252275 (-) | 147 | WP_095329938.1 | anti-repressor SinI family protein | - |
| C2H98_RS20380 (C2H98_20345) | - | 4252622..4253368 (+) | 747 | WP_123260548.1 | WecB/TagA/CpsF family glycosyltransferase | - |
Sequence
Protein
Download Length: 113 a.a. Molecular weight: 12901.63 Da Isoelectric Point: 8.4703
>NTDB_id=265411 C2H98_RS20370 WP_095329937.1 4251392..4251733(+) (ssbB) [Niallia circulans strain PK3_138]
MINQVTLVGRLTKDPELRVTQEGTSIVHVTVAVNRNYKNQAGDYDADFVQCTFWNKVAENTAQYCHKGSLVGVVGRIQTR
NYENQERKKVYVTEVIAESVRFLDPKKLEQTIP
MINQVTLVGRLTKDPELRVTQEGTSIVHVTVAVNRNYKNQAGDYDADFVQCTFWNKVAENTAQYCHKGSLVGVVGRIQTR
NYENQERKKVYVTEVIAESVRFLDPKKLEQTIP
Nucleotide
Download Length: 342 bp
>NTDB_id=265411 C2H98_RS20370 WP_095329937.1 4251392..4251733(+) (ssbB) [Niallia circulans strain PK3_138]
ATGATCAATCAAGTTACTTTAGTAGGAAGGCTAACGAAAGATCCAGAACTGCGAGTAACACAAGAAGGAACTTCTATTGT
CCATGTGACTGTTGCAGTAAATAGAAACTACAAGAATCAAGCTGGTGATTATGATGCAGATTTTGTGCAATGTACCTTTT
GGAATAAGGTAGCGGAAAATACAGCTCAGTATTGTCATAAAGGCTCTCTAGTTGGAGTCGTTGGCCGAATACAGACAAGA
AACTATGAAAATCAAGAGCGGAAAAAGGTCTATGTAACAGAAGTTATTGCTGAATCCGTACGTTTCTTGGACCCTAAAAA
ACTAGAACAAACCATTCCTTAA
ATGATCAATCAAGTTACTTTAGTAGGAAGGCTAACGAAAGATCCAGAACTGCGAGTAACACAAGAAGGAACTTCTATTGT
CCATGTGACTGTTGCAGTAAATAGAAACTACAAGAATCAAGCTGGTGATTATGATGCAGATTTTGTGCAATGTACCTTTT
GGAATAAGGTAGCGGAAAATACAGCTCAGTATTGTCATAAAGGCTCTCTAGTTGGAGTCGTTGGCCGAATACAGACAAGA
AACTATGAAAATCAAGAGCGGAAAAAGGTCTATGTAACAGAAGTTATTGCTGAATCCGTACGTTTCTTGGACCCTAAAAA
ACTAGAACAAACCATTCCTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
65.455 |
97.345 |
0.637 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
93.805 |
0.558 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
52.83 |
93.805 |
0.496 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
46.226 |
93.805 |
0.434 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
43.396 |
93.805 |
0.407 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
43.396 |
93.805 |
0.407 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
42.453 |
93.805 |
0.398 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
42.453 |
93.805 |
0.398 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
42.453 |
93.805 |
0.398 |
| ssbB/cilA | Streptococcus mitis SK321 |
42.453 |
93.805 |
0.398 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
42.857 |
92.92 |
0.398 |
| ssbA | Streptococcus mutans UA159 |
41.509 |
93.805 |
0.389 |