Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   C1S74_RS12640 Genome accession   NZ_CP025794
Coordinates   2555722..2557473 (+) Length   583 a.a.
NCBI ID   WP_045399099.1    Uniprot ID   -
Organism   Vibrio hyugaensis strain 090810a     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2550722..2562473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1S74_RS12620 pilM 2553030..2554046 (+) 1017 WP_045399109.1 type IV pilus assembly protein PilM Machinery gene
  C1S74_RS12625 pilN 2554030..2554596 (+) 567 WP_045399107.1 PilN domain-containing protein Machinery gene
  C1S74_RS12630 pilO 2554589..2555182 (+) 594 WP_045399104.1 type 4a pilus biogenesis protein PilO Machinery gene
  C1S74_RS12635 pilP 2555172..2555687 (+) 516 WP_045399101.1 pilus assembly protein PilP Machinery gene
  C1S74_RS12640 pilQ 2555722..2557473 (+) 1752 WP_045399099.1 type IV pilus secretin PilQ family protein Machinery gene
  C1S74_RS12645 aroK 2557662..2558180 (+) 519 WP_038865492.1 shikimate kinase AroK -
  C1S74_RS12650 aroB 2558212..2559312 (+) 1101 WP_045399097.1 3-dehydroquinate synthase -
  C1S74_RS12655 - 2559365..2560858 (+) 1494 WP_045399094.1 AAA family ATPase -
  C1S74_RS12660 - 2560928..2561767 (+) 840 WP_045399091.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -

Sequence

Protein


Download         Length: 583 a.a.        Molecular weight: 63982.03 Da        Isoelectric Point: 4.5265

>NTDB_id=263842 C1S74_RS12640 WP_045399099.1 2555722..2557473(+) (pilQ) [Vibrio hyugaensis strain 090810a]
MKMRQGLTRIPRKLIGLFSFWLFLLLAPFAFANEVQSNAFKSIDFRTNKDKDAVIVVELASPAAIVDIKRVQEGLSIDLL
NTSVKDDQLYLLDVKDFSTVVESVEIFRDTSTTRLVAYIDEDYTHDYRLTGRYLEVKVGKLKPNEKVPDKSILEKEGKLI
SINFQDIPVRNVLQLIADYNQFNLVVSDSVEGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILVAPKDELDLREKQQ
LEKQKLEQEMGDLSSEIIKVNFAKASDIAEMINGEGNISMLSDRGSMTIDERTNSLLIRELPSNIEVIREIIESLDIPVK
QVQIEARIVTINEGNMDELGVRWGFTSINGSHTVGGSIENNLATIGLYDGGGGDGEGEDGGGSVGIDDFLNVNLAATSPN
ATSLAFQVAKLGSDTLLDLELSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLESSSSGATSVTFKKAVLSLKVTP
QITPDNRLVLDLSVTQDRPGQVVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVPLLGDLPLLGALF
RRSYENVGKSELLIFVTPKVVIQ

Nucleotide


Download         Length: 1752 bp        

>NTDB_id=263842 C1S74_RS12640 WP_045399099.1 2555722..2557473(+) (pilQ) [Vibrio hyugaensis strain 090810a]
ATGAAAATGAGACAAGGATTAACACGCATACCAAGGAAGCTAATAGGGCTCTTCTCTTTTTGGTTGTTTTTACTTTTAGC
CCCTTTCGCTTTCGCGAACGAAGTTCAGTCTAATGCCTTCAAAAGCATTGATTTCCGTACCAATAAAGATAAAGACGCGG
TGATAGTGGTTGAGCTTGCTTCGCCAGCTGCCATAGTGGACATCAAGCGCGTGCAAGAAGGCTTGAGTATCGATTTGCTC
AATACGTCAGTTAAAGACGATCAGCTTTATCTTCTTGATGTAAAAGACTTCTCTACCGTGGTGGAAAGTGTCGAGATATT
TCGTGATACCTCGACAACGCGCCTCGTGGCTTATATTGATGAAGACTATACCCATGATTACCGTCTGACAGGGCGATACT
TGGAAGTCAAAGTGGGTAAGCTCAAGCCGAACGAAAAGGTGCCAGACAAAAGTATTCTGGAAAAAGAAGGCAAGTTGATT
TCGATTAACTTCCAAGACATTCCAGTGCGTAACGTTCTGCAACTTATCGCGGATTATAACCAGTTCAACTTAGTTGTTTC
TGACTCAGTAGAAGGCAACCTCACATTGCGTCTTGATGGTGTGCCTTGGCAGCAAGTACTCGATATCATTCTGCAAGTAA
AAGGCTTAGACAAACGCGTGGATGGCAACGTTATTCTGGTCGCACCAAAAGATGAGTTGGATTTGCGTGAGAAGCAGCAG
TTAGAGAAGCAGAAGCTTGAGCAAGAGATGGGAGACCTTTCTTCGGAGATCATCAAAGTGAACTTTGCGAAAGCCTCTGA
TATCGCAGAGATGATTAATGGTGAAGGTAATATCAGCATGTTGTCGGACCGCGGCAGTATGACGATTGATGAACGCACCA
ATTCTCTGTTGATTCGAGAGCTTCCTAGTAACATTGAAGTGATTCGTGAAATCATAGAGTCTCTCGATATTCCAGTGAAA
CAGGTTCAGATTGAAGCGCGTATCGTTACCATCAATGAAGGTAATATGGACGAGCTGGGTGTTCGTTGGGGCTTTACTTC
TATTAATGGTAGTCACACGGTGGGTGGTTCTATCGAGAATAACCTTGCCACTATCGGCCTTTATGATGGCGGCGGTGGTG
ACGGCGAAGGTGAAGACGGTGGTGGTAGTGTCGGTATCGATGATTTCCTTAACGTCAACTTGGCAGCAACCAGTCCAAAT
GCAACCAGCCTTGCCTTTCAAGTGGCTAAGCTAGGTTCTGACACCTTATTGGATTTAGAGCTGTCTGCACTACAACAAGA
ATCAAAGGCTGAAATCATTTCAAGTCCACGTCTCATTACCACTAACAAAAAACCGGCTTATATAGAGCAAGGTACAGAGA
TCCCTTACTTAGAGTCGTCATCCAGTGGTGCAACTTCTGTGACCTTTAAAAAAGCCGTGCTTAGTTTGAAGGTGACACCG
CAGATTACTCCTGACAACCGTTTGGTGCTGGATTTGAGTGTTACGCAAGATAGACCAGGGCAAGTGGTAAAAACGGGTAC
TGGTGAGGCGGTAGCGATCGATACTCAACGTATTGGTACTCAAGTGTTAGTGAATAATGGGGAGACCGTCGTACTCGGCG
GTATTTTCCAACATAGTATTACCAACTCCGTCGATAAGGTGCCTTTATTAGGTGATTTACCGCTGTTAGGAGCGCTTTTC
CGCCGAAGTTACGAAAATGTAGGCAAAAGTGAGTTGTTGATTTTTGTTACGCCGAAGGTCGTTATTCAGTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(423-581)

Bacterial type II/III secretion system short domain (Secretin_N)

(256-321)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio campbellii strain DS40M4

94.854

100

0.949
  pilQ Vibrio cholerae strain A1552

76.45

97.599

0.746
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

76.45

97.599

0.746
  pilQ Pseudomonas aeruginosa PAK

38.917

100

0.395
  pilQ Legionella pneumophila strain Lp02

41.273

94.34

0.389
  pilQ Legionella pneumophila strain ERS1305867

41.273

94.34

0.389
  comQ Acinetobacter baylyi ADP1

36.986

100

0.37
  pilQ Acinetobacter baumannii strain A118

36.088

100

0.367
  pilQ Acinetobacter baumannii D1279779

36.088

100

0.367

Multiple sequence alignment