Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | C1S74_RS12625 | Genome accession | NZ_CP025794 |
| Coordinates | 2554030..2554596 (+) | Length | 188 a.a. |
| NCBI ID | WP_045399107.1 | Uniprot ID | - |
| Organism | Vibrio hyugaensis strain 090810a | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2549030..2559596
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1S74_RS12610 | oxyR | 2549310..2550218 (+) | 909 | WP_038865506.1 | DNA-binding transcriptional regulator OxyR | - |
| C1S74_RS12615 | - | 2550288..2552852 (-) | 2565 | WP_045399114.1 | PBP1A family penicillin-binding protein | - |
| C1S74_RS12620 | pilM | 2553030..2554046 (+) | 1017 | WP_045399109.1 | type IV pilus assembly protein PilM | Machinery gene |
| C1S74_RS12625 | pilN | 2554030..2554596 (+) | 567 | WP_045399107.1 | PilN domain-containing protein | Machinery gene |
| C1S74_RS12630 | pilO | 2554589..2555182 (+) | 594 | WP_045399104.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| C1S74_RS12635 | pilP | 2555172..2555687 (+) | 516 | WP_045399101.1 | pilus assembly protein PilP | Machinery gene |
| C1S74_RS12640 | pilQ | 2555722..2557473 (+) | 1752 | WP_045399099.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| C1S74_RS12645 | aroK | 2557662..2558180 (+) | 519 | WP_038865492.1 | shikimate kinase AroK | - |
| C1S74_RS12650 | aroB | 2558212..2559312 (+) | 1101 | WP_045399097.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 188 a.a. Molecular weight: 21872.25 Da Isoelectric Point: 9.1674
>NTDB_id=263839 C1S74_RS12625 WP_045399107.1 2554030..2554596(+) (pilN) [Vibrio hyugaensis strain 090810a]
MLYHINLLPWRENLREEHRRRFIGLIVLGAIAALGVQWGIGKYYQYQQDQQQQRLDYLAHYISQLDKRIEAMKIAEQEHG
KILERLKIVEGLQNGRNKTTEFMNLMPSVIPNGVYVDKIKMNDFEIEISGISDSTPRLATMLDNMERSAKLLDVEMHSIV
HGKARFGKEFQTFKVSFMFKEAGGEQRG
MLYHINLLPWRENLREEHRRRFIGLIVLGAIAALGVQWGIGKYYQYQQDQQQQRLDYLAHYISQLDKRIEAMKIAEQEHG
KILERLKIVEGLQNGRNKTTEFMNLMPSVIPNGVYVDKIKMNDFEIEISGISDSTPRLATMLDNMERSAKLLDVEMHSIV
HGKARFGKEFQTFKVSFMFKEAGGEQRG
Nucleotide
Download Length: 567 bp
>NTDB_id=263839 C1S74_RS12625 WP_045399107.1 2554030..2554596(+) (pilN) [Vibrio hyugaensis strain 090810a]
ATGCTGTATCACATTAACCTACTCCCTTGGCGTGAAAACCTGCGTGAAGAACATCGTCGCCGCTTTATTGGATTGATTGT
GCTCGGTGCAATTGCAGCGTTAGGGGTGCAATGGGGAATTGGCAAATATTACCAATACCAACAAGACCAACAGCAACAAC
GTTTGGATTACTTAGCTCATTATATCTCTCAATTAGACAAACGCATTGAAGCAATGAAGATTGCAGAACAAGAGCACGGC
AAAATCTTAGAACGTTTGAAAATTGTTGAAGGTCTACAAAACGGACGCAATAAAACCACCGAGTTTATGAACTTGATGCC
GTCGGTGATCCCAAATGGTGTTTATGTCGACAAGATAAAAATGAACGACTTTGAGATTGAAATTTCCGGTATCTCTGACA
GCACGCCACGTTTGGCGACCATGTTAGACAACATGGAACGCTCTGCGAAGTTGCTGGATGTCGAAATGCATTCAATTGTT
CATGGTAAAGCACGTTTTGGTAAAGAGTTCCAAACGTTCAAAGTCTCTTTCATGTTTAAAGAAGCGGGAGGAGAACAACG
TGGTTAA
ATGCTGTATCACATTAACCTACTCCCTTGGCGTGAAAACCTGCGTGAAGAACATCGTCGCCGCTTTATTGGATTGATTGT
GCTCGGTGCAATTGCAGCGTTAGGGGTGCAATGGGGAATTGGCAAATATTACCAATACCAACAAGACCAACAGCAACAAC
GTTTGGATTACTTAGCTCATTATATCTCTCAATTAGACAAACGCATTGAAGCAATGAAGATTGCAGAACAAGAGCACGGC
AAAATCTTAGAACGTTTGAAAATTGTTGAAGGTCTACAAAACGGACGCAATAAAACCACCGAGTTTATGAACTTGATGCC
GTCGGTGATCCCAAATGGTGTTTATGTCGACAAGATAAAAATGAACGACTTTGAGATTGAAATTTCCGGTATCTCTGACA
GCACGCCACGTTTGGCGACCATGTTAGACAACATGGAACGCTCTGCGAAGTTGCTGGATGTCGAAATGCATTCAATTGTT
CATGGTAAAGCACGTTTTGGTAAAGAGTTCCAAACGTTCAAAGTCTCTTTCATGTTTAAAGAAGCGGGAGGAGAACAACG
TGGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio campbellii strain DS40M4 |
91.623 |
100 |
0.931 |
| pilN | Vibrio cholerae strain A1552 |
57.732 |
100 |
0.596 |