Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | CXL14_RS05780 | Genome accession | NZ_CP025258 |
| Coordinates | 1122777..1123118 (+) | Length | 113 a.a. |
| NCBI ID | WP_003151249.1 | Uniprot ID | A0A9Q3LHX6 |
| Organism | Bacillus sp. SJ-10 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1117777..1128118
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CXL14_RS05745 | - | 1117899..1118696 (+) | 798 | WP_007614310.1 | flagellar hook-basal body protein | - |
| CXL14_RS05750 | - | 1118721..1119542 (+) | 822 | WP_088056562.1 | flagellar hook-basal body protein | - |
| CXL14_RS05755 | - | 1119560..1120624 (-) | 1065 | WP_017418759.1 | tetratricopeptide repeat protein | - |
| CXL14_RS05760 | fabZ | 1120820..1121245 (+) | 426 | WP_003151242.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| CXL14_RS05765 | mscL | 1121302..1121697 (+) | 396 | WP_014419073.1 | large conductance mechanosensitive channel protein MscL | - |
| CXL14_RS05770 | - | 1121743..1122153 (-) | 411 | WP_007407558.1 | YwpF-like family protein | - |
| CXL14_RS05775 | - | 1122326..1122679 (+) | 354 | WP_003151247.1 | hypothetical protein | - |
| CXL14_RS05780 | ssbB | 1122777..1123118 (+) | 342 | WP_003151249.1 | single-stranded DNA-binding protein | Machinery gene |
| CXL14_RS05785 | - | 1123327..1124109 (+) | 783 | WP_003151250.1 | DeoR/GlpR family DNA-binding transcription regulator | - |
| CXL14_RS05790 | - | 1124106..1124963 (+) | 858 | WP_014419072.1 | Cof-type HAD-IIB family hydrolase | - |
| CXL14_RS05795 | - | 1125076..1127850 (-) | 2775 | WP_101287728.1 | DEAD/DEAH box helicase | - |
Sequence
Protein
Download Length: 113 a.a. Molecular weight: 12661.53 Da Isoelectric Point: 9.5812
>NTDB_id=259535 CXL14_RS05780 WP_003151249.1 1122777..1123118(+) (ssbB) [Bacillus sp. SJ-10]
MFNHVMLVGRLTKDPELRFTSAGIPVAHITLAVNRNFKSASGETGTDFVNCTIWRKNAENTALYCQKGSMVGVSGRIQTR
SYEKTDGVKVYVTEVMADTVRFMDQKRKEPLAE
MFNHVMLVGRLTKDPELRFTSAGIPVAHITLAVNRNFKSASGETGTDFVNCTIWRKNAENTALYCQKGSMVGVSGRIQTR
SYEKTDGVKVYVTEVMADTVRFMDQKRKEPLAE
Nucleotide
Download Length: 342 bp
>NTDB_id=259535 CXL14_RS05780 WP_003151249.1 1122777..1123118(+) (ssbB) [Bacillus sp. SJ-10]
TTGTTTAACCACGTTATGCTTGTCGGCCGGTTGACGAAAGACCCGGAGCTCCGTTTTACATCAGCGGGCATTCCCGTCGC
GCATATTACGCTGGCGGTAAACCGCAATTTTAAAAGCGCGTCGGGTGAAACCGGAACCGACTTCGTCAACTGCACCATCT
GGAGAAAAAACGCTGAAAACACGGCATTGTACTGCCAAAAAGGGTCAATGGTCGGTGTAAGCGGCAGAATCCAGACGAGA
AGCTATGAAAAGACAGACGGCGTAAAAGTTTATGTGACCGAGGTCATGGCTGATACCGTTCGGTTTATGGATCAAAAACG
GAAAGAGCCGCTGGCTGAATAG
TTGTTTAACCACGTTATGCTTGTCGGCCGGTTGACGAAAGACCCGGAGCTCCGTTTTACATCAGCGGGCATTCCCGTCGC
GCATATTACGCTGGCGGTAAACCGCAATTTTAAAAGCGCGTCGGGTGAAACCGGAACCGACTTCGTCAACTGCACCATCT
GGAGAAAAAACGCTGAAAACACGGCATTGTACTGCCAAAAAGGGTCAATGGTCGGTGTAAGCGGCAGAATCCAGACGAGA
AGCTATGAAAAGACAGACGGCGTAAAAGTTTATGTGACCGAGGTCATGGCTGATACCGTTCGGTTTATGGATCAAAAACG
GAAAGAGCCGCTGGCTGAATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
76.991 |
100 |
0.77 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
57.547 |
93.805 |
0.54 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
52.83 |
93.805 |
0.496 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
46.903 |
100 |
0.469 |
| ssbA | Streptococcus mutans UA159 |
42.478 |
100 |
0.425 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
41.593 |
100 |
0.416 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
41.593 |
100 |
0.416 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
40.708 |
100 |
0.407 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
40.708 |
100 |
0.407 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
40.708 |
100 |
0.407 |
| ssbB/cilA | Streptococcus mitis SK321 |
40.708 |
100 |
0.407 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
37.5 |
99.115 |
0.372 |