Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   CU648_RS25615 Genome accession   NZ_CP025122
Coordinates   4727461..4727820 (+) Length   119 a.a.
NCBI ID   WP_000982028.1    Uniprot ID   A0A150B2F8
Organism   Bacillus sp. HBCD-sjtu     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4722461..4732820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CU648_RS25590 (CU648_25590) - 4722734..4723486 (-) 753 WP_017561862.1 hypothetical protein -
  CU648_RS25595 (CU648_25595) - 4723596..4724243 (+) 648 WP_017561863.1 HD domain-containing protein -
  CU648_RS25600 (CU648_25600) - 4724240..4726135 (+) 1896 WP_000783201.1 ABC-F family ATP-binding cassette domain-containing protein -
  CU648_RS25605 (CU648_25605) - 4726211..4726942 (+) 732 WP_001260645.1 Bax inhibitor-1/YccA family protein -
  CU648_RS25610 (CU648_25610) - 4727048..4727302 (+) 255 WP_017561864.1 DUF4318 domain-containing protein -
  CU648_RS25615 (CU648_25615) ssbA 4727461..4727820 (+) 360 WP_000982028.1 single-stranded DNA-binding protein Machinery gene
  CU648_RS25620 (CU648_25620) - 4727941..4729068 (+) 1128 WP_017561865.1 conserved virulence factor C family protein -
  CU648_RS25625 (CU648_25625) - 4729072..4729455 (+) 384 WP_017561866.1 thiol-disulfide oxidoreductase DCC family protein -
  CU648_RS25630 (CU648_25630) - 4729539..4729973 (+) 435 WP_000063712.1 BrxA/BrxB family bacilliredoxin -
  CU648_RS25635 (CU648_25635) - 4730023..4730799 (+) 777 WP_101195707.1 class I SAM-dependent methyltransferase -
  CU648_RS25640 (CU648_25640) argS 4731100..4732788 (+) 1689 WP_017561869.1 arginine--tRNA ligase -

Sequence

Protein


Download         Length: 119 a.a.        Molecular weight: 13678.65 Da        Isoelectric Point: 9.6554

>NTDB_id=258521 CU648_RS25615 WP_000982028.1 4727461..4727820(+) (ssbA) [Bacillus sp. HBCD-sjtu]
MMNRVVLIGRLTKEPELYYTKQGVAYARVCVAVNRGFRNSLGEQQVDFINCVVWRKSAENVTEYCKKGSLVGITGRIHTR
NYEDDQGKRIYITEVVIENITFLEKRREGASKKDGTWGN

Nucleotide


Download         Length: 360 bp        

>NTDB_id=258521 CU648_RS25615 WP_000982028.1 4727461..4727820(+) (ssbA) [Bacillus sp. HBCD-sjtu]
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAGCAAGGCGTCGCGTATGC
ACGAGTATGTGTTGCGGTGAATAGAGGATTTCGAAATAGTTTAGGTGAACAACAAGTAGATTTTATTAATTGTGTCGTAT
GGCGAAAATCGGCTGAGAATGTAACTGAATATTGTAAGAAAGGGTCTCTTGTTGGAATTACCGGACGTATTCATACGAGG
AATTACGAGGATGATCAAGGAAAGAGAATATATATAACGGAAGTTGTGATTGAAAATATTACATTTTTGGAGAAAAGACG
GGAAGGGGCATCAAAAAAAGATGGAACGTGGGGAAATTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A150B2F8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.491

89.076

0.521
  ssb Latilactobacillus sakei subsp. sakei 23K

57.547

89.076

0.513
  ssbB Bacillus subtilis subsp. subtilis str. 168

52.679

94.118

0.496
  ssbB Lactococcus lactis subsp. cremoris KW2

46.552

97.479

0.454
  ssbB Streptococcus sobrinus strain NIDR 6715-7

42.982

95.798

0.412
  ssbA Streptococcus mutans UA159

40.517

97.479

0.395
  ssbB/cilA Streptococcus pneumoniae TIGR4

40.351

95.798

0.387
  ssbB/cilA Streptococcus mitis NCTC 12261

40.351

95.798

0.387
  ssbB/cilA Streptococcus pneumoniae Rx1

39.474

95.798

0.378
  ssbB/cilA Streptococcus pneumoniae D39

39.474

95.798

0.378
  ssbB/cilA Streptococcus pneumoniae R6

39.474

95.798

0.378
  ssbB/cilA Streptococcus mitis SK321

39.474

95.798

0.378

Multiple sequence alignment