Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | CWI35_RS11980 | Genome accession | NZ_CP025074 |
| Coordinates | 2308156..2308515 (+) | Length | 119 a.a. |
| NCBI ID | WP_011232661.1 | Uniprot ID | U2WRT9 |
| Organism | [Bacillus] caldolyticus strain NEB414 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2303156..2313515
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CWI35_RS11960 (CWI35_11930) | - | 2303893..2305269 (+) | 1377 | WP_119877793.1 | aspartate kinase | - |
| CWI35_RS11965 (CWI35_11935) | - | 2305651..2306550 (+) | 900 | WP_119877794.1 | processed acidic surface protein | - |
| CWI35_RS11970 (CWI35_11940) | - | 2306575..2307237 (+) | 663 | WP_119877795.1 | class D sortase | - |
| CWI35_RS11975 (CWI35_11945) | - | 2307449..2307886 (-) | 438 | WP_119877796.1 | YwpF-like family protein | - |
| CWI35_RS11980 (CWI35_11950) | ssbB | 2308156..2308515 (+) | 360 | WP_011232661.1 | single-stranded DNA-binding protein | Machinery gene |
| CWI35_RS11985 (CWI35_11955) | - | 2308637..2309044 (-) | 408 | WP_063193357.1 | helix-turn-helix transcriptional regulator | - |
| CWI35_RS11990 (CWI35_11960) | - | 2309253..2309762 (+) | 510 | WP_119877797.1 | hypothetical protein | - |
| CWI35_RS11995 (CWI35_11965) | - | 2309916..2311268 (+) | 1353 | WP_119877798.1 | peptidoglycan-binding protein | - |
| CWI35_RS12000 (CWI35_11970) | - | 2311314..2312093 (+) | 780 | WP_011232657.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 119 a.a. Molecular weight: 13427.38 Da Isoelectric Point: 9.8293
>NTDB_id=258035 CWI35_RS11980 WP_011232661.1 2308156..2308515(+) (ssbB) [[Bacillus] caldolyticus strain NEB414]
MRQHMINQVVLVGRLTKDPELRYTAEGAAVATVTLAVARNFRNAEGGIDADFVPCVLWRKTAEHTANYCRKGSMVAVTGR
IQTRRYDKKDGQRVYVTEVVAESVQFLHSGKKPEWPEHV
MRQHMINQVVLVGRLTKDPELRYTAEGAAVATVTLAVARNFRNAEGGIDADFVPCVLWRKTAEHTANYCRKGSMVAVTGR
IQTRRYDKKDGQRVYVTEVVAESVQFLHSGKKPEWPEHV
Nucleotide
Download Length: 360 bp
>NTDB_id=258035 CWI35_RS11980 WP_011232661.1 2308156..2308515(+) (ssbB) [[Bacillus] caldolyticus strain NEB414]
ATGCGCCAACACATGATCAACCAAGTCGTGTTGGTCGGCCGGTTGACGAAAGATCCCGAGCTTCGCTACACGGCCGAAGG
GGCTGCCGTCGCGACTGTCACACTGGCGGTGGCCAGAAATTTCCGCAACGCGGAAGGGGGGATTGACGCCGATTTCGTTC
CATGCGTTTTATGGCGGAAAACGGCGGAACATACCGCCAATTATTGCCGAAAAGGTTCGATGGTGGCGGTGACGGGGAGA
ATCCAAACGCGCCGCTACGATAAAAAAGACGGTCAACGCGTCTATGTCACCGAAGTCGTCGCGGAGTCCGTCCAATTTCT
CCACTCCGGCAAGAAACCAGAATGGCCGGAGCACGTATAG
ATGCGCCAACACATGATCAACCAAGTCGTGTTGGTCGGCCGGTTGACGAAAGATCCCGAGCTTCGCTACACGGCCGAAGG
GGCTGCCGTCGCGACTGTCACACTGGCGGTGGCCAGAAATTTCCGCAACGCGGAAGGGGGGATTGACGCCGATTTCGTTC
CATGCGTTTTATGGCGGAAAACGGCGGAACATACCGCCAATTATTGCCGAAAAGGTTCGATGGTGGCGGTGACGGGGAGA
ATCCAAACGCGCCGCTACGATAAAAAAGACGGTCAACGCGTCTATGTCACCGAAGTCGTCGCGGAGTCCGTCCAATTTCT
CCACTCCGGCAAGAAACCAGAATGGCCGGAGCACGTATAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
67.961 |
86.555 |
0.588 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.385 |
87.395 |
0.571 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
60 |
88.235 |
0.529 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
48.571 |
88.235 |
0.429 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
46.667 |
88.235 |
0.412 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
46.667 |
88.235 |
0.412 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
45.714 |
88.235 |
0.403 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
45.714 |
88.235 |
0.403 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
45.714 |
88.235 |
0.403 |
| ssbB/cilA | Streptococcus mitis SK321 |
45.714 |
88.235 |
0.403 |
| ssbA | Streptococcus mutans UA159 |
45.714 |
88.235 |
0.403 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
42.308 |
87.395 |
0.37 |