Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   CWD84_RS02330 Genome accession   NZ_CP025001
Coordinates   442844..443185 (+) Length   113 a.a.
NCBI ID   WP_045926379.1    Uniprot ID   A0AAE2NWI9
Organism   Bacillus siamensis strain SCSIO 05746     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 437844..448185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CWD84_RS02295 (CWD84_02295) - 437963..438760 (+) 798 WP_047475848.1 flagellar hook-basal body protein -
  CWD84_RS02300 (CWD84_02300) - 438785..439606 (+) 822 WP_060965099.1 flagellar hook-basal body protein -
  CWD84_RS02305 (CWD84_02305) - 439627..440691 (-) 1065 WP_060964081.1 tetratricopeptide repeat protein -
  CWD84_RS02310 (CWD84_02310) fabZ 440887..441312 (+) 426 WP_003151242.1 3-hydroxyacyl-ACP dehydratase FabZ -
  CWD84_RS02315 (CWD84_02315) mscL 441369..441764 (+) 396 WP_049627557.1 large conductance mechanosensitive channel protein MscL -
  CWD84_RS02320 (CWD84_02320) - 441810..442220 (-) 411 WP_016937685.1 YwpF-like family protein -
  CWD84_RS02325 (CWD84_02325) - 442393..442746 (+) 354 WP_060964082.1 hypothetical protein -
  CWD84_RS02330 (CWD84_02330) ssbB 442844..443185 (+) 342 WP_045926379.1 single-stranded DNA-binding protein Machinery gene
  CWD84_RS02335 (CWD84_02335) - 443395..444177 (+) 783 WP_060964083.1 DeoR/GlpR family DNA-binding transcription regulator -
  CWD84_RS02340 (CWD84_02340) - 444174..445031 (+) 858 WP_060964084.1 Cof-type HAD-IIB family hydrolase -
  CWD84_RS02345 (CWD84_02345) - 445144..447918 (-) 2775 WP_060964085.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12563.41 Da        Isoelectric Point: 9.5812

>NTDB_id=257060 CWD84_RS02330 WP_045926379.1 442844..443185(+) (ssbB) [Bacillus siamensis strain SCSIO 05746]
MFNHVMLVGRLTKDPELRFTSAGIAVAHITLAVSRNFKSASGETGTDFVNCTIWRKSAENTALYCQKGSLVGVSGRIQTR
SYEKTDGVKVYVTEVMADTVRFMDQKRKEPLAE

Nucleotide


Download         Length: 342 bp        

>NTDB_id=257060 CWD84_RS02330 WP_045926379.1 442844..443185(+) (ssbB) [Bacillus siamensis strain SCSIO 05746]
TTGTTTAACCACGTGATGCTTGTCGGCCGGCTGACGAAAGACCCGGAGCTCCGTTTTACATCAGCGGGCATTGCCGTGGC
TCATATTACCTTGGCTGTCAGCCGCAATTTTAAAAGCGCGTCAGGTGAAACCGGGACTGACTTTGTCAACTGCACCATTT
GGAGAAAAAGCGCTGAAAACACAGCATTGTACTGCCAAAAAGGGTCATTGGTCGGTGTAAGCGGCAGAATCCAGACGAGA
AGCTATGAAAAGACAGACGGCGTAAAAGTTTATGTGACCGAGGTCATGGCTGATACCGTTCGGTTTATGGATCAAAAACG
GAAAGAGCCGCTGGCTGAATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

77.876

100

0.779
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.491

93.805

0.549
  ssb Latilactobacillus sakei subsp. sakei 23K

54.717

93.805

0.513
  ssbB Streptococcus sobrinus strain NIDR 6715-7

46.903

100

0.469
  ssbA Streptococcus mutans UA159

42.478

100

0.425
  ssbB/cilA Streptococcus mitis NCTC 12261

41.593

100

0.416
  ssbB/cilA Streptococcus pneumoniae TIGR4

41.593

100

0.416
  ssbB/cilA Streptococcus pneumoniae Rx1

40.708

100

0.407
  ssbB/cilA Streptococcus pneumoniae D39

40.708

100

0.407
  ssbB/cilA Streptococcus pneumoniae R6

40.708

100

0.407
  ssbB/cilA Streptococcus mitis SK321

40.708

100

0.407
  ssbB Lactococcus lactis subsp. cremoris KW2

39.048

92.92

0.363

Multiple sequence alignment