Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   CVO91_RS01075 Genome accession   NZ_CP024974
Coordinates   166891..167286 (+) Length   131 a.a.
NCBI ID   WP_002940025.1    Uniprot ID   A0A2I5KCW7
Organism   Streptococcus suis strain CZ130302     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 161891..172286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVO91_RS01040 (CVO91_01040) - 162110..162250 (+) 141 WP_100198729.1 putative holin-like toxin -
  CVO91_RS01045 (CVO91_01045) pepA 162570..163631 (-) 1062 WP_002940006.1 glutamyl aminopeptidase -
  CVO91_RS01050 (CVO91_01050) - 163778..164062 (+) 285 WP_002940015.1 DUF4651 domain-containing protein -
  CVO91_RS01055 (CVO91_01055) - 164059..164379 (+) 321 WP_002940018.1 thioredoxin family protein -
  CVO91_RS01060 (CVO91_01060) - 164424..165380 (+) 957 WP_002940021.1 DUF1002 domain-containing protein -
  CVO91_RS01065 (CVO91_01065) ytpR 165399..166022 (+) 624 WP_002940022.1 YtpR family tRNA-binding protein -
  CVO91_RS01070 (CVO91_01070) - 166057..166836 (-) 780 WP_002940024.1 DUF2785 domain-containing protein -
  CVO91_RS01075 (CVO91_01075) ssbA 166891..167286 (+) 396 WP_002940025.1 single-stranded DNA-binding protein Machinery gene
  CVO91_RS12975 - 167405..167650 (-) 246 WP_002940026.1 hypothetical protein -
  CVO91_RS01085 (CVO91_01085) groES 167848..168129 (+) 282 WP_002940028.1 co-chaperone GroES -
  CVO91_RS01090 (CVO91_01090) groL 168140..169762 (+) 1623 WP_002940029.1 chaperonin GroEL -
  CVO91_RS01095 (CVO91_01095) rpsL 169994..170407 (+) 414 WP_002940030.1 30S ribosomal protein S12 -
  CVO91_RS01100 (CVO91_01100) rpsG 170424..170894 (+) 471 WP_002940031.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14853.76 Da        Isoelectric Point: 5.0026

>NTDB_id=256915 CVO91_RS01075 WP_002940025.1 166891..167286(+) (ssbA) [Streptococcus suis strain CZ130302]
MYNKVILIGRLTAQPELTQTPTGKTLTRVTVAVNRRFKTENGEREADFLNVIFWGKLAETLVSYGSKGSLISIDGELRTR
KYEKDGSNHYVTEILGQSFQLLESRAQRAMRENNTGDDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=256915 CVO91_RS01075 WP_002940025.1 166891..167286(+) (ssbA) [Streptococcus suis strain CZ130302]
ATGTATAATAAAGTTATTTTAATCGGTCGCTTGACGGCCCAACCTGAACTCACACAAACACCAACTGGCAAAACTTTGAC
TCGTGTTACTGTTGCAGTTAATCGACGATTTAAGACAGAAAATGGCGAACGTGAAGCAGATTTTCTCAATGTTATTTTCT
GGGGCAAACTGGCGGAAACGCTTGTTTCCTATGGCAGCAAGGGTAGTCTGATTTCTATTGACGGTGAGTTGCGAACCCGT
AAATACGAAAAAGACGGCAGCAACCATTATGTGACTGAAATCTTAGGACAATCCTTCCAGTTGCTCGAAAGTCGGGCCCA
ACGTGCCATGCGTGAAAACAATACTGGTGATGACCTAGCAGACTTGGTCTTGGAAGAGGAGGAATTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I5KCW7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

77.099

100

0.771
  ssbB Streptococcus sobrinus strain NIDR 6715-7

76.336

100

0.763
  ssbB/cilA Streptococcus pneumoniae TIGR4

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae R6

71.756

100

0.718
  ssbB/cilA Streptococcus mitis SK321

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae D39

71.756

100

0.718
  ssbB/cilA Streptococcus mitis NCTC 12261

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae Rx1

71.756

100

0.718
  ssbB Lactococcus lactis subsp. cremoris KW2

63.393

85.496

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

45.133

86.26

0.389
  ssbA Bacillus subtilis subsp. subtilis str. 168

47.17

80.916

0.382

Multiple sequence alignment