Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYA   Type   Machinery gene
Locus tag   CVO91_RS00915 Genome accession   NZ_CP024974
Coordinates   140520..141470 (+) Length   316 a.a.
NCBI ID   WP_100664710.1    Uniprot ID   -
Organism   Streptococcus suis strain CZ130302     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 135520..146470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVO91_RS00895 (CVO91_00895) - 137133..137354 (-) 222 Protein_138 transposase -
  CVO91_RS00900 (CVO91_00900) - 137602..138858 (-) 1257 WP_100664708.1 ISL3 family transposase -
  CVO91_RS00905 (CVO91_00905) - 139084..139449 (+) 366 WP_004195575.1 DUF1033 family protein -
  CVO91_RS00910 (CVO91_00910) - 139484..140434 (-) 951 WP_100664709.1 S66 peptidase family protein -
  CVO91_RS00915 (CVO91_00915) comYA 140520..141470 (+) 951 WP_100664710.1 competence type IV pilus ATPase ComGA Machinery gene
  CVO91_RS00920 (CVO91_00920) comYB 141382..142419 (+) 1038 WP_050572090.1 competence type IV pilus assembly protein ComGB Machinery gene
  CVO91_RS00925 (CVO91_00925) comYC 142421..142702 (+) 282 WP_024377792.1 competence type IV pilus major pilin ComGC Machinery gene
  CVO91_RS00930 (CVO91_00930) comGD 142683..143090 (+) 408 WP_100664711.1 competence type IV pilus minor pilin ComGD -
  CVO91_RS00935 (CVO91_00935) comYE 143062..143355 (+) 294 WP_044765771.1 competence type IV pilus minor pilin ComGE Machinery gene
  CVO91_RS00940 (CVO91_00940) comGF/cglF 143342..143776 (+) 435 WP_100664712.1 competence type IV pilus minor pilin ComGF Machinery gene
  CVO91_RS00945 (CVO91_00945) comGG 143754..144266 (+) 513 WP_100664713.1 competence type IV pilus minor pilin ComGG -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 35511.29 Da        Isoelectric Point: 5.2978

>NTDB_id=256908 CVO91_RS00915 WP_100664710.1 140520..141470(+) (comYA) [Streptococcus suis strain CZ130302]
MIQEKARKMIEEAVTDRVSDIYLVPRGQDYQVYHRIMDEREFVQDVAEEEVTAIISHFKFLAGLNVGEKRRSQQGSCDYD
YGSGEISLRLSTVGDYRGKESLVIRLLYDNDKELKFWFEAAERLAEEIKGRGLYLFSGPVGSGKTTLMYHLARLKFPDKQ
ILTIEDPVEIKQEDMLQLQLNEAIGATYDNLIKLSLRHRPDLLIIGEIRDAETARAVIRASLTGATVFSTVHARSISGVY
ARMLELGVSPEELNNALQGIAYQRLIGGGGVVDFAKGNYQNHSADQWNEQIDRLFAAGHISLRQAETEKIALGSPA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=256908 CVO91_RS00915 WP_100664710.1 140520..141470(+) (comYA) [Streptococcus suis strain CZ130302]
ATGATACAAGAAAAAGCAAGAAAGATGATTGAAGAGGCGGTGACAGATAGGGTCAGTGACATTTATCTGGTTCCTCGTGG
TCAGGACTACCAAGTCTACCACCGCATCATGGACGAGCGGGAGTTTGTGCAAGACGTGGCTGAGGAGGAAGTAACAGCCA
TCATCAGCCATTTCAAGTTTTTAGCAGGTTTAAATGTTGGTGAAAAACGCCGTAGCCAGCAGGGTTCCTGTGACTATGAT
TATGGGAGCGGAGAGATTTCACTTCGCTTATCAACTGTCGGAGATTATCGTGGCAAGGAAAGTCTGGTTATCCGCCTGCT
CTATGACAATGACAAGGAACTCAAGTTCTGGTTTGAGGCGGCCGAGCGACTTGCAGAAGAAATCAAGGGACGAGGGCTCT
ACCTTTTTTCGGGTCCAGTCGGCTCTGGTAAGACCACCCTTATGTACCATCTTGCCAGGCTGAAATTCCCAGACAAACAG
ATTTTGACCATTGAAGATCCTGTCGAAATCAAGCAGGAGGATATGTTGCAACTCCAACTCAATGAAGCCATCGGAGCCAC
CTACGACAATTTGATAAAATTATCCCTGCGTCATCGGCCAGACTTGCTCATCATCGGTGAAATTCGGGATGCGGAAACGG
CACGGGCGGTCATCAGGGCCAGCCTGACAGGTGCGACGGTTTTCTCAACGGTTCACGCAAGGTCTATTTCAGGTGTCTAC
GCCCGTATGTTAGAACTAGGTGTCAGCCCTGAGGAGCTAAACAATGCCCTTCAAGGGATTGCCTATCAACGCTTGATCGG
GGGAGGAGGTGTAGTGGATTTTGCAAAGGGAAATTACCAAAACCATTCCGCAGACCAGTGGAATGAACAAATTGATCGCC
TTTTTGCAGCAGGACATATCAGTCTTCGGCAGGCAGAAACAGAAAAAATTGCCCTTGGCTCGCCAGCGTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(8-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYA Streptococcus gordonii str. Challis substr. CH1

68.71

98.101

0.674
  comYA Streptococcus mutans UA159

67.524

98.418

0.665
  comYA Streptococcus mutans UA140

67.524

98.418

0.665
  comGA/cglA/cilD Streptococcus pneumoniae D39

65.595

98.418

0.646
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

65.595

98.418

0.646
  comGA/cglA/cilD Streptococcus pneumoniae R6

65.595

98.418

0.646
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

65.595

98.418

0.646
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

64.952

98.418

0.639
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

65.161

98.101

0.639
  comGA Lactococcus lactis subsp. cremoris KW2

53.943

100

0.541

Multiple sequence alignment