Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF/cglF   Type   Machinery gene
Locus tag   CVO91_RS00940 Genome accession   NZ_CP024974
Coordinates   143342..143776 (+) Length   144 a.a.
NCBI ID   WP_100664712.1    Uniprot ID   -
Organism   Streptococcus suis strain CZ130302     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 138342..148776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVO91_RS00905 (CVO91_00905) - 139084..139449 (+) 366 WP_004195575.1 DUF1033 family protein -
  CVO91_RS00910 (CVO91_00910) - 139484..140434 (-) 951 WP_100664709.1 S66 peptidase family protein -
  CVO91_RS00915 (CVO91_00915) comYA 140520..141470 (+) 951 WP_100664710.1 competence type IV pilus ATPase ComGA Machinery gene
  CVO91_RS00920 (CVO91_00920) comYB 141382..142419 (+) 1038 WP_050572090.1 competence type IV pilus assembly protein ComGB Machinery gene
  CVO91_RS00925 (CVO91_00925) comYC 142421..142702 (+) 282 WP_024377792.1 competence type IV pilus major pilin ComGC Machinery gene
  CVO91_RS00930 (CVO91_00930) comGD 142683..143090 (+) 408 WP_100664711.1 competence type IV pilus minor pilin ComGD -
  CVO91_RS00935 (CVO91_00935) comYE 143062..143355 (+) 294 WP_044765771.1 competence type IV pilus minor pilin ComGE Machinery gene
  CVO91_RS00940 (CVO91_00940) comGF/cglF 143342..143776 (+) 435 WP_100664712.1 competence type IV pilus minor pilin ComGF Machinery gene
  CVO91_RS00945 (CVO91_00945) comGG 143754..144266 (+) 513 WP_100664713.1 competence type IV pilus minor pilin ComGG -
  CVO91_RS00950 (CVO91_00950) - 144494..146575 (+) 2082 WP_100664714.1 GBS Bsp-like repeat-containing protein -
  CVO91_RS00955 (CVO91_00955) - 146781..147911 (+) 1131 WP_100664715.1 ISAs1 family transposase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16579.96 Da        Isoelectric Point: 8.8056

>NTDB_id=256912 CVO91_RS00940 WP_100664712.1 143342..143776(+) (comGF/cglF) [Streptococcus suis strain CZ130302]
MLKSKIPAFTLLECLVALVILSGSLLVFESLSKLLVQETHYQRQSVQKEWLVFSSQLRSEWDQAELVKVENGKVYVNKGE
QDLAFGKSRSDDFRKTNDKGQGYQPMIYQVDSAAISQKNQLVRIDFSFKNGEERTFIYAFKEKS

Nucleotide


Download         Length: 435 bp        

>NTDB_id=256912 CVO91_RS00940 WP_100664712.1 143342..143776(+) (comGF/cglF) [Streptococcus suis strain CZ130302]
TTGTTAAAAAGTAAAATTCCTGCTTTTACTCTCTTGGAATGCTTGGTAGCCTTAGTCATCCTATCAGGAAGTCTTCTGGT
CTTTGAAAGCTTGTCAAAACTGTTGGTTCAAGAGACACATTATCAACGTCAATCTGTCCAAAAGGAGTGGCTGGTATTTT
CTAGTCAGTTGCGGTCGGAGTGGGACCAGGCTGAATTGGTCAAGGTTGAAAATGGCAAGGTCTATGTCAACAAAGGCGAA
CAGGATTTGGCCTTTGGCAAGTCACGGTCGGATGATTTTCGGAAAACCAATGATAAGGGACAGGGCTACCAGCCCATGAT
TTATCAAGTAGACAGCGCAGCTATTTCCCAAAAAAACCAGCTAGTGCGCATCGACTTTAGCTTTAAAAATGGAGAGGAGC
GGACGTTTATCTATGCTTTTAAAGAAAAAAGTTAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(37-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF/cglF Streptococcus pneumoniae Rx1

53.901

97.917

0.528
  comGF/cglF Streptococcus pneumoniae D39

53.901

97.917

0.528
  comGF/cglF Streptococcus pneumoniae R6

53.901

97.917

0.528
  comGF/cglF Streptococcus pneumoniae TIGR4

53.901

97.917

0.528
  comGF/cglF Streptococcus mitis NCTC 12261

53.731

93.056

0.5
  comGF/cglF Streptococcus mitis SK321

52.239

93.056

0.486
  comYF Streptococcus mutans UA140

48.611

100

0.486
  comYF Streptococcus mutans UA159

47.917

100

0.479
  comGF Lactococcus lactis subsp. cremoris KW2

45.39

97.917

0.444

Multiple sequence alignment