Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   CVO91_RS00920 Genome accession   NZ_CP024974
Coordinates   141382..142419 (+) Length   345 a.a.
NCBI ID   WP_050572090.1    Uniprot ID   -
Organism   Streptococcus suis strain CZ130302     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 136382..147419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVO91_RS00895 (CVO91_00895) - 137133..137354 (-) 222 Protein_138 transposase -
  CVO91_RS00900 (CVO91_00900) - 137602..138858 (-) 1257 WP_100664708.1 ISL3 family transposase -
  CVO91_RS00905 (CVO91_00905) - 139084..139449 (+) 366 WP_004195575.1 DUF1033 family protein -
  CVO91_RS00910 (CVO91_00910) - 139484..140434 (-) 951 WP_100664709.1 S66 peptidase family protein -
  CVO91_RS00915 (CVO91_00915) comYA 140520..141470 (+) 951 WP_100664710.1 competence type IV pilus ATPase ComGA Machinery gene
  CVO91_RS00920 (CVO91_00920) comYB 141382..142419 (+) 1038 WP_050572090.1 competence type IV pilus assembly protein ComGB Machinery gene
  CVO91_RS00925 (CVO91_00925) comYC 142421..142702 (+) 282 WP_024377792.1 competence type IV pilus major pilin ComGC Machinery gene
  CVO91_RS00930 (CVO91_00930) comGD 142683..143090 (+) 408 WP_100664711.1 competence type IV pilus minor pilin ComGD -
  CVO91_RS00935 (CVO91_00935) comYE 143062..143355 (+) 294 WP_044765771.1 competence type IV pilus minor pilin ComGE Machinery gene
  CVO91_RS00940 (CVO91_00940) comGF/cglF 143342..143776 (+) 435 WP_100664712.1 competence type IV pilus minor pilin ComGF Machinery gene
  CVO91_RS00945 (CVO91_00945) comGG 143754..144266 (+) 513 WP_100664713.1 competence type IV pilus minor pilin ComGG -
  CVO91_RS00950 (CVO91_00950) - 144494..146575 (+) 2082 WP_100664714.1 GBS Bsp-like repeat-containing protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 38958.85 Da        Isoelectric Point: 9.2855

>NTDB_id=256909 CVO91_RS00920 WP_050572090.1 141382..142419(+) (comYB) [Streptococcus suis strain CZ130302]
MNKLIAFLQQDISVFGRQKQKKLPLARQRKVIELFNNLFASGFHLGEIVDFLKRSQLLADPYTQVLSDGLLAGKPFSSLL
ADLRFSDAVVTQVALAEVHGNTSLSLSHIQSYLENVSKVRKKLIEVATYPIILLGFLLLIMLGLKNYLLPQLEEGNAATM
LINHLPTIFLSLSGLSLVAVLAGMVWFRKTNKIKVFSRLAALPFFGKLIQTYLTAYYAREWGSLIGQGLDLPQIVGLMQE
QQSQLFREIGQDLEQSLSNGQSFHEHIKTYAFFKRELSLIAEYGQVKSKLGSELTVYAAECWEDFFSRVDRAMQLIQPLV
FLFVALMVVLIYAAMLLPIYQNMEL

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=256909 CVO91_RS00920 WP_050572090.1 141382..142419(+) (comYB) [Streptococcus suis strain CZ130302]
ATGAACAAATTGATCGCCTTTTTGCAGCAGGACATATCAGTCTTCGGCAGGCAGAAACAGAAAAAATTGCCCTTGGCTCG
CCAGCGTAAGGTCATTGAGCTTTTCAATAATCTCTTTGCCAGTGGTTTTCATCTGGGGGAGATTGTTGATTTCCTCAAAC
GCAGTCAGCTTCTGGCAGATCCCTATACCCAGGTCTTGTCAGACGGGCTGTTAGCAGGAAAGCCATTTTCAAGCCTCTTA
GCGGATTTGCGATTCTCAGACGCGGTTGTAACACAGGTAGCTCTGGCAGAGGTCCATGGCAATACCAGCCTGAGTTTGAG
CCATATCCAGTCCTATCTGGAAAATGTCAGCAAGGTTCGTAAAAAGCTGATTGAGGTGGCGACCTATCCGATTATATTGC
TTGGTTTTCTGCTTTTGATTATGCTAGGCTTGAAAAACTATCTTCTGCCCCAGTTGGAGGAAGGCAATGCAGCGACCATG
CTGATTAATCATCTACCAACCATCTTTTTATCTCTAAGTGGACTTAGTTTGGTGGCGGTCTTAGCTGGTATGGTTTGGTT
TCGTAAAACCAATAAAATTAAGGTATTTTCCCGCTTGGCAGCTCTGCCATTTTTCGGAAAACTCATCCAAACCTACCTGA
CGGCCTATTACGCCAGGGAGTGGGGGAGTTTGATTGGGCAAGGTTTGGACCTGCCGCAGATTGTGGGCTTGATGCAGGAG
CAGCAGTCGCAGCTCTTTCGGGAGATTGGCCAGGACCTGGAGCAGTCGCTTTCCAATGGTCAGAGCTTTCACGAACACAT
TAAGACCTACGCCTTTTTTAAGCGGGAGCTGAGTTTGATTGCCGAGTATGGTCAGGTCAAGTCCAAGTTGGGGAGCGAGT
TGACAGTTTATGCGGCTGAATGTTGGGAGGATTTTTTCTCTCGGGTCGATAGAGCCATGCAGCTGATTCAACCGCTGGTC
TTTCTCTTTGTGGCCTTAATGGTCGTTCTTATCTACGCAGCCATGTTGCTGCCGATTTATCAAAATATGGAGTTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(218-338)

Type II secretion system (T2SS), protein F (T2SSF)

(33-150)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus gordonii str. Challis substr. CH1

63.45

99.13

0.629
  comYB Streptococcus mutans UA140

59.184

99.42

0.588
  comYB Streptococcus mutans UA159

59.184

99.42

0.588
  comGB/cglB Streptococcus mitis NCTC 12261

60.597

97.101

0.588
  comGB/cglB Streptococcus mitis SK321

60.299

97.101

0.586
  comGB/cglB Streptococcus pneumoniae Rx1

60

97.101

0.583
  comGB/cglB Streptococcus pneumoniae D39

60

97.101

0.583
  comGB/cglB Streptococcus pneumoniae R6

60

97.101

0.583
  comGB/cglB Streptococcus pneumoniae TIGR4

60

97.101

0.583
  comGB Lactococcus lactis subsp. cremoris KW2

50.742

97.681

0.496

Multiple sequence alignment