Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   CSW12_RS17125 Genome accession   NZ_CP024655
Coordinates   3354062..3354397 (-) Length   111 a.a.
NCBI ID   WP_000982013.1    Uniprot ID   A0A9X6LR10
Organism   Bacillus cereus strain MLY1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3349062..3359397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSW12_RS17095 (CSW12_17130) - 3349199..3349633 (-) 435 WP_000063706.1 BrxA/BrxB family bacilliredoxin -
  CSW12_RS17100 (CSW12_17135) - 3349717..3350100 (-) 384 WP_000634891.1 thiol-disulfide oxidoreductase DCC family protein -
  CSW12_RS17105 (CSW12_17140) - 3350471..3351700 (+) 1230 WP_100909797.1 IS110 family transposase -
  CSW12_RS17110 (CSW12_17145) - 3351834..3352964 (-) 1131 WP_100910326.1 conserved virulence factor C family protein -
  CSW12_RS32455 - 3353246..3353320 (-) 75 Protein_3286 transposase -
  CSW12_RS17120 (CSW12_17155) - 3353460..3353789 (+) 330 WP_097911860.1 6-aminohexanoate hydrolase -
  CSW12_RS17125 (CSW12_17160) ssbA 3354062..3354397 (-) 336 WP_000982013.1 single-stranded DNA-binding protein Machinery gene
  CSW12_RS17130 (CSW12_17165) - 3354559..3354813 (-) 255 WP_000975133.1 DUF4318 domain-containing protein -
  CSW12_RS17135 (CSW12_17170) - 3354919..3355650 (-) 732 WP_001260655.1 Bax inhibitor-1/YccA family membrane protein -
  CSW12_RS17140 (CSW12_17175) - 3355726..3357621 (-) 1896 WP_100910327.1 ABC-F family ATP-binding cassette domain-containing protein -
  CSW12_RS17145 (CSW12_17180) - 3357618..3358265 (-) 648 WP_097911861.1 HD domain-containing protein -
  CSW12_RS17150 (CSW12_17185) - 3358375..3359157 (+) 783 WP_065228748.1 hypothetical protein -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12785.64 Da        Isoelectric Point: 9.4344

>NTDB_id=254825 CSW12_RS17125 WP_000982013.1 3354062..3354397(-) (ssbA) [Bacillus cereus strain MLY1]
MMNRVVLIGRLTKEPELYYTKQGVAYARICIAVNRGFRNSLGEQQVDFINCVVWRKSAENVTEYCKKGSLVGITGRIQTS
NYDDEQGKRIYRTEVVIESITFLERRREGAS

Nucleotide


Download         Length: 336 bp        

>NTDB_id=254825 CSW12_RS17125 WP_000982013.1 3354062..3354397(-) (ssbA) [Bacillus cereus strain MLY1]
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAACAAGGCGTTGCTTATGC
AAGAATATGTATTGCGGTGAATAGAGGATTTCGAAATAGTTTAGGTGAACAACAAGTCGATTTTATTAATTGTGTCGTTT
GGCGAAAATCGGCTGAGAATGTAACTGAATATTGTAAGAAGGGATCACTTGTTGGGATTACAGGGCGTATTCAGACGAGT
AATTACGATGATGAACAAGGCAAGAGAATATATAGAACTGAAGTTGTGATTGAGAGTATTACCTTTTTGGAGAGAAGGCG
GGAGGGGGCATCGTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.491

95.495

0.559
  ssb Latilactobacillus sakei subsp. sakei 23K

55.66

95.495

0.532
  ssbB Bacillus subtilis subsp. subtilis str. 168

50.893

100

0.514
  ssbB Lactococcus lactis subsp. cremoris KW2

45.714

94.595

0.432
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.636

99.099

0.432
  ssbB/cilA Streptococcus mitis NCTC 12261

40.909

99.099

0.405
  ssbB/cilA Streptococcus pneumoniae TIGR4

40.909

99.099

0.405
  ssbB/cilA Streptococcus pneumoniae Rx1

40

99.099

0.396
  ssbB/cilA Streptococcus pneumoniae D39

40

99.099

0.396
  ssbB/cilA Streptococcus pneumoniae R6

40

99.099

0.396
  ssbB/cilA Streptococcus mitis SK321

40

99.099

0.396
  ssbA Streptococcus mutans UA159

40

99.099

0.396

Multiple sequence alignment