Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYC   Type   Machinery gene
Locus tag   AUF16_RS07490 Genome accession   NZ_CP024590
Coordinates   1507703..1507969 (-) Length   88 a.a.
NCBI ID   WP_016181444.1    Uniprot ID   A0A2N8PXL3
Organism   Enterococcus avium strain FDAARGOS_184     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1502703..1512969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AUF16_RS07450 (AUF16_07450) - 1502897..1503340 (-) 444 WP_225844326.1 EutP/PduV family microcompartment system protein -
  AUF16_RS07455 (AUF16_07455) - 1503340..1503690 (-) 351 WP_016181451.1 BMC domain-containing protein -
  AUF16_RS07460 (AUF16_07460) - 1503863..1505059 (-) 1197 WP_049219789.1 acetate kinase -
  AUF16_RS07465 (AUF16_07465) - 1505107..1506114 (-) 1008 WP_048718836.1 class I SAM-dependent methyltransferase -
  AUF16_RS07470 (AUF16_07470) comGG 1506280..1506630 (-) 351 WP_225844327.1 competence type IV pilus minor pilin ComGG -
  AUF16_RS07475 (AUF16_07475) comGF 1506593..1507018 (-) 426 WP_048718834.1 competence type IV pilus minor pilin ComGF -
  AUF16_RS07480 (AUF16_07480) comGE 1507005..1507286 (-) 282 WP_225844328.1 competence type IV pilus minor pilin ComGE -
  AUF16_RS07485 (AUF16_07485) comGD 1507264..1507719 (-) 456 WP_049219791.1 competence type IV pilus minor pilin ComGD -
  AUF16_RS07490 (AUF16_07490) comYC 1507703..1507969 (-) 267 WP_016181444.1 competence type IV pilus major pilin ComGC Machinery gene
  AUF16_RS07495 (AUF16_07495) comGB 1507966..1508979 (-) 1014 WP_049219792.1 competence type IV pilus assembly protein ComGB -
  AUF16_RS07500 (AUF16_07500) comGA 1508939..1509889 (-) 951 WP_049219793.1 competence type IV pilus ATPase ComGA -
  AUF16_RS07505 (AUF16_07505) trmB 1509982..1510632 (-) 651 WP_016181441.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  AUF16_RS07510 (AUF16_07510) - 1510742..1511524 (-) 783 WP_016181440.1 phosphotransferase family protein -
  AUF16_RS07515 (AUF16_07515) dat 1511614..1512483 (-) 870 WP_049219794.1 D-amino-acid transaminase -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 10058.89 Da        Isoelectric Point: 8.3736

>NTDB_id=254086 AUF16_RS07490 WP_016181444.1 1507703..1507969(-) (comYC) [Enterococcus avium strain FDAARGOS_184]
MKKKLSGFTLLEMLVVLFIISLLLLLFVPKLMSQKESATNKSDAAIVKVVETQIEVFELDYGRKPEEGELVSKGYVSEDQ
YNKYVQKK

Nucleotide


Download         Length: 267 bp        

>NTDB_id=254086 AUF16_RS07490 WP_016181444.1 1507703..1507969(-) (comYC) [Enterococcus avium strain FDAARGOS_184]
GTGAAGAAGAAGCTTTCAGGTTTTACTTTGTTGGAAATGTTAGTTGTTTTATTTATTATTAGTCTGCTGTTGCTGTTATT
TGTACCCAAACTAATGAGTCAAAAAGAAAGCGCAACCAATAAAAGCGATGCTGCTATTGTCAAAGTTGTTGAGACACAAA
TTGAAGTCTTTGAACTGGATTATGGACGTAAGCCAGAGGAAGGTGAATTAGTCAGTAAAGGTTATGTTAGTGAAGACCAG
TATAATAAATATGTACAAAAGAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N8PXL3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYC Streptococcus suis isolate S10

54.118

96.591

0.523
  comGC/cglC Streptococcus mitis SK321

50.562

100

0.511
  comGC/cglC Streptococcus mitis NCTC 12261

50.602

94.318

0.477
  comYC Streptococcus gordonii str. Challis substr. CH1

48.81

95.455

0.466
  comGC/cglC Streptococcus pneumoniae D39

48.193

94.318

0.455
  comGC/cglC Streptococcus pneumoniae R6

48.193

94.318

0.455
  comGC/cglC Streptococcus pneumoniae TIGR4

48.193

94.318

0.455
  comGC/cglC Streptococcus pneumoniae Rx1

48.193

94.318

0.455
  comGC Lactococcus lactis subsp. cremoris KW2

47.619

95.455

0.455
  comYC Streptococcus mutans UA140

47.5

90.909

0.432
  comYC Streptococcus mutans UA159

47.5

90.909

0.432
  comGC Latilactobacillus sakei subsp. sakei 23K

43.75

90.909

0.398
  comGC Staphylococcus aureus MW2

43.038

89.773

0.386
  comGC Staphylococcus aureus N315

43.038

89.773

0.386
  comGC Bacillus subtilis subsp. subtilis str. 168

43.243

84.091

0.364

Multiple sequence alignment