Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   CS400_RS16515 Genome accession   NZ_CP024413
Coordinates   1892212..1892511 (-) Length   99 a.a.
NCBI ID   WP_225868554.1    Uniprot ID   -
Organism   Lactiplantibacillus plantarum strain ATCC 8014     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1887212..1897511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS400_RS09185 (CS400_09180) rpsO 1887440..1887709 (-) 270 WP_003639022.1 30S ribosomal protein S15 -
  CS400_RS09190 (CS400_09185) rpsT 1887937..1888191 (+) 255 WP_003645660.1 30S ribosomal protein S20 -
  CS400_RS09195 (CS400_09190) holA 1888368..1889429 (-) 1062 WP_003640804.1 DNA polymerase III subunit delta -
  CS400_RS09200 (CS400_09195) - 1889380..1891671 (-) 2292 WP_015825687.1 DNA internalization-related competence protein ComEC/Rec2 -
  CS400_RS09205 (CS400_09200) - 1891672..1892157 (-) 486 WP_003645663.1 ComE operon protein 2 -
  CS400_RS16515 comEA 1892212..1892511 (-) 300 WP_225868554.1 helix-hairpin-helix domain-containing protein Machinery gene
  CS400_RS16520 - 1892515..1892937 (-) 423 WP_015825689.1 SLBB domain-containing protein -
  CS400_RS09215 (CS400_09210) - 1893040..1894086 (-) 1047 WP_003640808.1 SepM family pheromone-processing serine protease -
  CS400_RS09220 (CS400_09215) coaD 1894079..1894570 (-) 492 WP_003644584.1 pantetheine-phosphate adenylyltransferase -
  CS400_RS09225 (CS400_09220) rsmD 1894574..1895137 (-) 564 WP_015825690.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  CS400_RS09230 (CS400_09225) - 1895153..1895455 (-) 303 WP_003640811.1 YlbG family protein -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 10452.78 Da        Isoelectric Point: 8.4758

>NTDB_id=253461 CS400_RS16515 WP_225868554.1 1892212..1892511(-) (comEA) [Lactiplantibacillus plantarum strain ATCC 8014]
MIYVPAKGEQAPAVAPPVVQSTGPTGGTPTSDHAATDKVNLNTADVAALQTLSGIGQKKAEKIIDYRQQHGNFKTIDDLK
NVSGFGEKTVAKYKDQLTV

Nucleotide


Download         Length: 300 bp        

>NTDB_id=253461 CS400_RS16515 WP_225868554.1 1892212..1892511(-) (comEA) [Lactiplantibacillus plantarum strain ATCC 8014]
GTGATCTACGTGCCAGCTAAGGGCGAACAGGCCCCGGCTGTTGCGCCACCAGTCGTCCAGTCAACGGGGCCTACTGGCGG
AACACCAACTAGTGATCATGCGGCAACGGATAAGGTCAATCTCAACACGGCTGATGTGGCCGCGTTGCAAACGTTGAGCG
GAATCGGGCAGAAGAAGGCTGAAAAAATCATTGATTATCGCCAGCAACATGGTAATTTTAAAACAATTGATGATTTGAAA
AACGTCAGCGGCTTTGGAGAAAAGACTGTGGCCAAATACAAAGACCAGCTCACCGTCTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(36-98)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Latilactobacillus sakei subsp. sakei 23K

43.243

100

0.485
  comEA Lactococcus lactis subsp. cremoris KW2

45.545

100

0.465
  comEA/celA/cilE Streptococcus pneumoniae D39

46.465

100

0.465
  comEA/celA/cilE Streptococcus pneumoniae Rx1

46.465

100

0.465
  comEA/celA/cilE Streptococcus pneumoniae R6

46.465

100

0.465
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

45.455

100

0.455
  comEA Staphylococcus aureus MW2

44

100

0.444
  comEA Staphylococcus aureus N315

44

100

0.444
  comEA Bacillus subtilis subsp. subtilis str. 168

44.444

100

0.444
  comEA Streptococcus thermophilus LMD-9

44.444

100

0.444
  comEA/celA/cilE Streptococcus mitis NCTC 12261

44.444

100

0.444
  comEA/celA/cilE Streptococcus mitis SK321

43.434

100

0.434

Multiple sequence alignment