Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   FORC73_RS00195 Genome accession   NZ_CP024082
Coordinates   40021..41136 (+) Length   371 a.a.
NCBI ID   WP_119782990.1    Uniprot ID   -
Organism   Vibrio cholerae strain FORC_073     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 35021..46136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC73_RS00175 (FORC73_0032) rsmB 35944..37224 (-) 1281 WP_001102804.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  FORC73_RS00180 (FORC73_0033) fmt 37280..38227 (-) 948 WP_000083531.1 methionyl-tRNA formyltransferase -
  FORC73_RS00185 (FORC73_0034) def 38245..38754 (-) 510 WP_000115010.1 peptide deformylase -
  FORC73_RS00190 (FORC73_0035) - 38894..40021 (+) 1128 WP_162923370.1 LysM peptidoglycan-binding domain-containing protein -
  FORC73_RS00195 (FORC73_0036) dprA 40021..41136 (+) 1116 WP_119782990.1 DNA-processing protein DprA Machinery gene
  FORC73_RS00200 (FORC73_0037) - 41139..41615 (+) 477 WP_000979770.1 DUF494 family protein -
  FORC73_RS00205 (FORC73_0038) - 41620..42186 (+) 567 WP_000087517.1 type I DNA topoisomerase -
  FORC73_RS00210 (FORC73_0039) - 42259..43392 (-) 1134 WP_001265390.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  FORC73_RS00215 (FORC73_0040) purE 43396..43881 (-) 486 WP_000215768.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  FORC73_RS00220 (FORC73_0041) - 44048..44605 (+) 558 WP_001971062.1 L-threonylcarbamoyladenylate synthase -
  FORC73_RS00225 (FORC73_0042) hemF 44624..45541 (+) 918 WP_000443977.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 39959.92 Da        Isoelectric Point: 7.1952

>NTDB_id=251712 FORC73_RS00195 WP_119782990.1 40021..41136(+) (dprA) [Vibrio cholerae strain FORC_073]
MKDQDLAAWLALCFTPKLGSKTISHLLATRLPAQLQSFTPKQWLASGLKPEQLVFLTTQAAKQAEQCLQWRAAANNRYIV
TPHCPLYPRLLKEISSSPPVLFIEGIWEAVHDPAVAIVGSRNASVDGRQIARQFATELAQSGLVVTSGLALGIDGYAHDG
ALQAQGQTVAVLGSGLAQVYPKQHQGLAERIIAQGALVSEFAPHTPPKADHFPRRNRIISGLSLGVVVVEAAEKSGSLIT
ARYAAEQGREVFVVPGSIFNAASQGSNQLIRQGACLVQSVQQIHQELKNALTWSLSEQVPYQATLFSAVQADEELPFPEL
LANVGIEATPIDILASRTQIPVQDIMMQLLELELLGHVVAVPGGYIRKGRG

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=251712 FORC73_RS00195 WP_119782990.1 40021..41136(+) (dprA) [Vibrio cholerae strain FORC_073]
ATGAAAGATCAGGATTTAGCGGCATGGTTGGCGCTCTGTTTTACTCCTAAACTAGGCAGCAAAACCATTTCTCACCTGCT
TGCGACCCGTTTGCCAGCCCAGTTGCAAAGTTTTACGCCTAAGCAATGGTTGGCCAGCGGGCTTAAGCCCGAACAACTGG
TGTTTTTAACCACTCAAGCGGCTAAGCAAGCCGAGCAGTGTTTGCAATGGCGTGCCGCAGCCAATAACCGCTATATCGTC
ACTCCTCATTGCCCGCTTTACCCCCGTTTATTGAAAGAGATTAGCTCATCGCCTCCCGTCCTGTTTATTGAAGGGATATG
GGAAGCGGTGCATGACCCCGCGGTGGCTATCGTGGGTAGCCGCAATGCCAGTGTTGATGGGCGGCAGATCGCTCGCCAGT
TTGCCACTGAGCTCGCACAGTCAGGTTTAGTGGTCACCAGTGGTTTAGCGCTTGGTATTGATGGCTATGCGCACGATGGC
GCTTTGCAAGCACAAGGGCAAACCGTAGCAGTATTAGGTTCAGGGCTGGCGCAGGTTTACCCCAAACAGCATCAAGGGTT
AGCGGAGCGAATCATCGCCCAAGGAGCCTTGGTTTCTGAGTTTGCCCCTCACACACCTCCTAAAGCCGATCACTTTCCGC
GCCGTAACCGAATTATCAGCGGCTTATCGCTGGGCGTTGTGGTGGTAGAAGCTGCGGAGAAAAGCGGCTCACTCATCACT
GCTCGCTACGCCGCTGAGCAAGGGCGTGAGGTCTTTGTGGTTCCCGGCTCGATTTTTAATGCTGCCAGCCAAGGTAGCAA
TCAATTGATTCGTCAAGGCGCTTGTTTGGTGCAAAGTGTGCAACAAATTCATCAAGAGCTCAAAAATGCGCTGACTTGGT
CGCTCTCTGAACAAGTTCCTTATCAAGCAACACTTTTTTCTGCTGTACAGGCCGATGAAGAATTGCCATTTCCCGAGCTG
TTAGCTAACGTAGGAATAGAAGCTACACCTATTGATATTCTCGCAAGTCGGACCCAGATACCGGTGCAAGATATCATGAT
GCAGCTCTTGGAGCTTGAGCTCCTTGGGCATGTGGTTGCAGTACCTGGTGGCTATATTAGAAAGGGGAGAGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(319-364)

DNA recombination-mediator protein A (DNA_processg_A)

(76-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio cholerae strain A1552

98.922

100

0.989
  dprA Vibrio campbellii strain DS40M4

58.378

99.73

0.582
  dprA Glaesserella parasuis strain SC1401

44.149

100

0.447
  dprA Legionella pneumophila strain ERS1305867

42.781

100

0.431
  dprA Neisseria meningitidis strain C311

38.095

100

0.41
  dprA Neisseria meningitidis MC58

38.095

100

0.41
  dprA Haemophilus influenzae Rd KW20

44.444

89.757

0.399
  dprA Neisseria gonorrhoeae strain FA1090

36.658

100

0.396
  dprA Acinetobacter baumannii D1279779

43.505

89.218

0.388
  dprA Neisseria gonorrhoeae MS11

35.84

100

0.385
  dprA Acinetobacter baumannii strain A118

43.202

89.218

0.385
  dprA Acinetobacter baylyi ADP1

41.003

91.375

0.375

Multiple sequence alignment