Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CK910_RS07355 Genome accession   NZ_CP023818
Coordinates   1572529..1573770 (-) Length   413 a.a.
NCBI ID   WP_098981882.1    Uniprot ID   -
Organism   Aeromonas sp. CA23     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1567529..1578770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CK910_RS07330 (CK910_07330) mutT 1569498..1569905 (+) 408 WP_098981871.1 8-oxo-dGTP diphosphatase MutT -
  CK910_RS07335 (CK910_07335) yacG 1569995..1570189 (-) 195 WP_043139929.1 DNA gyrase inhibitor YacG -
  CK910_RS07340 (CK910_07340) zapD 1570199..1570921 (-) 723 WP_043139926.1 cell division protein ZapD -
  CK910_RS07345 (CK910_07345) coaE 1570959..1571573 (-) 615 WP_098981877.1 dephospho-CoA kinase -
  CK910_RS07350 (CK910_07350) pilD 1571594..1572466 (-) 873 WP_098981880.1 type IVa prepilin peptidase/methyltransferase TapD Machinery gene
  CK910_RS07355 (CK910_07355) pilC 1572529..1573770 (-) 1242 WP_098981882.1 type II secretion system F family protein Machinery gene
  CK910_RS07360 (CK910_07360) pilB 1573903..1575609 (-) 1707 WP_043137334.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  CK910_RS07365 (CK910_07365) tapA 1575616..1576032 (-) 417 WP_098985023.1 type IVa pilus major pilin TapA -
  CK910_RS07375 (CK910_07375) nadC 1576354..1577211 (-) 858 WP_098981885.1 carboxylating nicotinate-nucleotide diphosphorylase -
  CK910_RS07380 (CK910_07380) - 1577217..1577687 (-) 471 WP_172955263.1 TIGR02281 family clan AA aspartic protease -
  CK910_RS07385 (CK910_07385) ampD 1577836..1578408 (+) 573 WP_098981888.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45371.49 Da        Isoelectric Point: 9.8637

>NTDB_id=250331 CK910_RS07355 WP_098981882.1 1572529..1573770(-) (pilC) [Aeromonas sp. CA23]
MATLTQKQNAPKKVFAFRWSGVNRKGQKVSGELQADSINTVKAELRKQGVNVTKVSKKSQGLFSKGGAKIKPMDIAIVSR
QITTMLSAGVPLVQSLQIIARSHEKASMRELMGQIAADVETGTPMSEALRRHPRHFDALYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPAMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPIFTQFVIGISRFMQHWWYVIFGGTA
FAIFLYVRAWRASQKVKDNTDKFILTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALISAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVVA
MYLPIFKLGDVVG

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=250331 CK910_RS07355 WP_098981882.1 1572529..1573770(-) (pilC) [Aeromonas sp. CA23]
ATGGCAACGCTAACGCAGAAACAGAATGCCCCCAAGAAAGTCTTCGCCTTCCGCTGGAGCGGTGTGAACCGCAAGGGTCA
AAAGGTCTCCGGTGAATTGCAGGCCGACAGTATCAACACGGTCAAGGCTGAACTGCGCAAGCAGGGTGTCAACGTCACCA
AGGTGAGCAAGAAGAGCCAGGGGTTATTCTCCAAGGGCGGCGCCAAGATCAAGCCGATGGACATTGCCATCGTCTCCCGT
CAAATCACCACCATGCTCTCCGCTGGCGTCCCCCTGGTGCAGAGCCTGCAGATCATAGCCCGCAGCCACGAAAAAGCCTC
GATGCGTGAGCTCATGGGGCAGATCGCCGCCGACGTGGAAACCGGCACCCCCATGTCCGAGGCGCTGCGCCGCCATCCCC
GCCACTTTGATGCGCTCTATTGTGATTTGGTTGAGGCGGGGGAGCAATCCGGTGCGCTGGAGACCATCTATGACCGCATC
GCCACCTATCGGGAAAAGTCGGAAGCGCTCAAGTCCAAGATCAAGAAAGCGATGTTCTATCCCGCCATGGTCATCCTGGT
CGCCATCGTCGTCACCTCCATACTGCTGCTGTTCGTCATCCCGCAGTTTGAGGATATCTTCAAGAGCTTCGGCGCCGAGC
TGCCCATCTTCACCCAGTTTGTCATCGGCATCTCCCGCTTCATGCAGCATTGGTGGTATGTCATCTTTGGCGGCACAGCG
TTCGCCATTTTCCTCTATGTACGGGCATGGCGCGCGTCCCAGAAGGTCAAAGACAATACCGACAAGTTCATCCTCACCAT
ACCCGTGGTCGGCATGATACTGCACAAGGCGGCCATGGCCCGCTTCGCCCGCACCCTCTCCACTACCTTCTCCGCCGGTA
TCCCACTGGTTGATGCACTGATCTCGGCCGCCGGTGCCTCCGGCAACTATGTCTATCGCACCGCCGTCATGGCCATTCGC
AACGAGGTGGTCGCCGGCATGCAGATCAACGTGGCCATGCGCACCGTGGACCTCTTCCCCGACATGGTGATCCAGATGGT
GATGATCGGCGAGGAGTCAGGCGCCATCGATGATATGCTCTCCAAGGTCGCGACCATCTTCGAACAAGAGGTTGATGACT
TGGTCGACGGCCTCACCAGCTTGCTCGAGCCCCTCATCATGGTAGTGCTGGGGGTACTGGTTGGTGGCATGGTCGTGGCC
ATGTACTTGCCCATCTTCAAGCTGGGAGACGTAGTAGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.071

95.884

0.547
  pilC Acinetobacter baumannii D1279779

54

96.852

0.523
  pilC Acinetobacter baylyi ADP1

52.141

96.126

0.501
  pilC Legionella pneumophila strain ERS1305867

51.111

98.063

0.501
  pilC Vibrio cholerae strain A1552

47.87

96.61

0.462
  pilC Vibrio campbellii strain DS40M4

46.287

97.821

0.453
  pilG Neisseria gonorrhoeae MS11

40.741

98.063

0.4
  pilG Neisseria meningitidis 44/76-A

40.494

98.063

0.397
  pilC Thermus thermophilus HB27

38

96.852

0.368

Multiple sequence alignment