Detailed information NTG0250330

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: CK910_RS07350
• Genome accession: NZ_CP023818
• Coordinates: 1571594..1572466 (-)
• Length: 290 a.a.
• NCBI ID: WP_098981880.1
• Uniprot ID: A0AAU8WZA3
• Organism: Aeromonas sp. CA23
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1566594..1577466

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CK910_RS07325 (CK910_07325)	secA	1566686..1569406 (+)	2721	WP_043139934.1	preprotein translocase subunit SecA	-
CK910_RS07330 (CK910_07330)	mutT	1569498..1569905 (+)	408	WP_098981871.1	8-oxo-dGTP diphosphatase MutT	-
CK910_RS07335 (CK910_07335)	yacG	1569995..1570189 (-)	195	WP_043139929.1	DNA gyrase inhibitor YacG	-
CK910_RS07340 (CK910_07340)	zapD	1570199..1570921 (-)	723	WP_043139926.1	cell division protein ZapD	-
CK910_RS07345 (CK910_07345)	coaE	1570959..1571573 (-)	615	WP_098981877.1	dephospho-CoA kinase	-
CK910_RS07350 (CK910_07350)	pilD	1571594..1572466 (-)	873	WP_098981880.1	type IVa prepilin peptidase/methyltransferase TapD	Machinery gene
CK910_RS07355 (CK910_07355)	pilC	1572529..1573770 (-)	1242	WP_098981882.1	type II secretion system F family protein	Machinery gene
CK910_RS07360 (CK910_07360)	pilB	1573903..1575609 (-)	1707	WP_043137334.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
CK910_RS07365 (CK910_07365)	tapA	1575616..1576032 (-)	417	WP_098985023.1	type IVa pilus major pilin TapA	-
CK910_RS07375 (CK910_07375)	nadC	1576354..1577211 (-)	858	WP_098981885.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32307.56 Da
• Isoelectric Point: 6.7363

>NTDB_id=250330 CK910_RS07350 WP_098981880.1 1571594..1572466(-) (pilD) [Aeromonas sp. CA23]
MALLLELAHGLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRSYFNPDDEGVDEPPYNLMVPRSCCPHCNHP
ITALENIPLLSWLWLRGRCRGCQAPISARYPLVELLTALLSVAVAMTLAPGWGTLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLLGGFVSLGDAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL
VGAFMGIGLILLRNHHQSKPIPFGPYLAIAGWIALLWGNSITRWYLTNFL

Nucleotide

• Length: 873 bp

>NTDB_id=250330 CK910_RS07350 WP_098981880.1 1571594..1572466(-) (pilD) [Aeromonas sp. CA23]
ATGGCACTTCTCCTCGAGCTGGCACACGGCTTGCCCTGGCTCTATTTCTCGCTGGTATTTCTCTTTTCCCTGATGATCGG
CAGTTTTCTCAACGTGGTGATCCATCGCCTGCCCATCATGCTGGAACGGGAGTGGCAGGCCGAATATCGCAGCTACTTCA
ACCCTGATGACGAGGGGGTCGACGAGCCGCCCTACAACCTGATGGTACCGCGATCCTGCTGCCCCCACTGCAATCACCCC
ATCACGGCACTGGAAAACATCCCCCTGCTGAGCTGGCTCTGGCTCAGGGGTCGCTGCCGAGGCTGCCAGGCTCCCATATC
GGCCCGCTATCCGCTGGTCGAGCTGCTGACGGCGCTGCTCTCGGTAGCCGTTGCCATGACACTCGCACCGGGCTGGGGCA
CGTTGGCGGCCCTGCTGCTGACCTGGGTACTGGTGGCACTCACCTTCATCGATCTCGACAAGATGCTGCTGCCGGACCAG
CTCACCCTGCCCCTGCTGTGGGGCGGGCTGTTGTTCAATTTGCTGGGCGGTTTTGTATCGCTTGGCGATGCGGTGATCGG
CGCCATGGCCGGTTATCTGGTGCTATGGAGCCTCTATTGGGCCTTCAAGTTGCTCACCGGCAAGGAGGGCATGGGCTATG
GCGACTTCAAGCTGCTGGCCGCGCTGGGCGCCTGGCTGGGCTGGCAGGCGCTGCCCATAGTGCTGCTGCTCTCCTCCCTG
GTTGGCGCCTTCATGGGCATAGGCCTGATCCTGCTGCGCAATCACCATCAGAGCAAACCCATTCCCTTTGGCCCCTATCT
CGCCATCGCGGGCTGGATTGCGCTGCTGTGGGGCAATAGCATCACCCGCTGGTACCTCACAAATTTCCTCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (139-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	60.976	98.966	0.603
pilD	Vibrio campbellii strain DS40M4	56.207	100	0.562
pilD	Acinetobacter nosocomialis M2	55.224	92.414	0.51
pilD	Acinetobacter baumannii D1279779	54.851	92.414	0.507
pilD	Neisseria gonorrhoeae MS11	50.542	95.517	0.483