Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CN538_RS19285 Genome accession   NZ_CP023559
Coordinates   4203694..4204812 (+) Length   372 a.a.
NCBI ID   WP_242495401.1    Uniprot ID   -
Organism   Salinicola tamaricis strain F01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4198694..4209812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CN538_RS19265 - 4198887..4200367 (-) 1481 Protein_4274 TrkH family potassium uptake protein -
  CN538_RS19270 - 4200591..4200875 (+) 285 WP_106420471.1 hypothetical protein -
  CN538_RS19275 - 4201021..4201521 (-) 501 WP_106420472.1 pilin -
  CN538_RS19280 pilB 4201772..4203088 (+) 1317 WP_340638195.1 ATPase, T2SS/T4P/T4SS family Machinery gene
  CN538_RS25715 pilB 4203103..4203501 (+) 399 WP_340638196.1 hypothetical protein Machinery gene
  CN538_RS19285 pilC 4203694..4204812 (+) 1119 WP_242495401.1 type II secretion system F family protein Machinery gene
  CN538_RS19290 pilD 4204898..4205758 (+) 861 WP_242495402.1 A24 family peptidase Machinery gene
  CN538_RS19295 coaE 4205755..4206420 (+) 666 WP_106420473.1 dephospho-CoA kinase -
  CN538_RS19300 yacG 4206417..4206659 (+) 243 WP_106420474.1 DNA gyrase inhibitor YacG -
  CN538_RS19305 - 4206750..4207703 (-) 954 WP_106420475.1 Nudix family hydrolase -
  CN538_RS19310 argJ 4207785..4208993 (-) 1209 WP_106420476.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -

Sequence

Protein


Download         Length: 372 a.a.        Molecular weight: 40464.23 Da        Isoelectric Point: 10.5777

>NTDB_id=248397 CN538_RS19285 WP_242495401.1 4203694..4204812(+) (pilC) [Salinicola tamaricis strain F01]
MRSARSVRSWREKIIVKRITRKTSPFGIAGCASAISPCSRASWRPCSAPAAAAAGVQGRARHLRNPAMRNLVENLGNDIS
AGASFSQALSRHPQRFDRMFVNMVAAGEQSGALDRMLERLASYREKIDTLKGRIKKALYYPIAVVAVGIGVTALLLIKVV
PQFESLFAGFGAELPAFTRFTIELSELAQAHWWQALLALVLAGFALRRAVKRSPRFAYRVDQLLLRLPVLGSILDKGSIA
RFSRTLATTFNAGVPLVEALETAAGATGNRVHQRAIIGLRDDVGDGQQLAFAMRRARIFPIMAVQMVSIGEEAGDLDTML
DKVADFYEEEVDNQVDALTSLLEPLIIVVLGVLVGGLVASMYLPIFQMGSAI

Nucleotide


Download         Length: 1119 bp        

>NTDB_id=248397 CN538_RS19285 WP_242495401.1 4203694..4204812(+) (pilC) [Salinicola tamaricis strain F01]
GTGAGGTCAGCGAGGTCCGTCAGGAGCTGGCGCGAGAAGATCATCGTCAAGCGGATCACGCGCAAGACCAGCCCGTTCGG
CATCGCCGGGTGCGCCAGCGCGATATCACCCTGTTCGCGCGCCAGCTGGCGACCATGCTCCGCGCCGGCGGCCGCTGCTG
CAGGCGTGCAAGGTCGCGCGAGACACCTGCGCAATCCGGCGATGCGCAACCTGGTCGAAAATCTGGGCAACGACATCAGC
GCCGGAGCCAGCTTCTCACAGGCGCTATCACGTCACCCGCAGCGCTTCGATCGCATGTTCGTCAACATGGTCGCCGCCGG
CGAGCAGTCGGGCGCGCTGGATCGCATGCTCGAACGCCTGGCCAGCTATCGCGAAAAGATCGACACCCTGAAGGGGCGCA
TCAAGAAGGCGCTCTACTACCCCATCGCCGTGGTCGCGGTGGGAATCGGCGTCACCGCCCTGCTGCTGATCAAGGTAGTG
CCGCAGTTCGAGAGCCTGTTTGCCGGCTTCGGCGCCGAGCTACCCGCCTTTACGCGCTTCACCATCGAGCTCTCCGAGCT
GGCCCAGGCGCACTGGTGGCAGGCACTGCTGGCGCTGGTGCTCGCGGGCTTCGCGCTGCGCCGGGCGGTCAAGCGCTCGC
CGCGTTTCGCCTATCGGGTCGACCAGCTCCTGCTGCGCCTGCCGGTGCTCGGCAGCATTCTCGACAAGGGCTCGATCGCG
CGCTTCTCGCGCACCCTGGCGACGACCTTCAATGCCGGCGTTCCTCTGGTGGAGGCGCTCGAGACCGCCGCCGGTGCGAC
CGGCAACCGCGTGCACCAGCGGGCGATCATCGGCCTGCGCGACGATGTCGGCGACGGCCAGCAGCTCGCCTTCGCCATGC
GCCGGGCACGCATCTTTCCGATCATGGCGGTACAGATGGTGAGCATCGGTGAGGAGGCGGGCGACCTCGACACCATGCTC
GACAAGGTCGCCGACTTCTACGAAGAGGAGGTCGACAACCAGGTCGACGCACTCACCTCGCTGCTGGAGCCGCTGATCAT
CGTGGTACTGGGGGTGCTGGTGGGTGGTCTGGTGGCGTCGATGTATCTGCCGATTTTTCAAATGGGCTCTGCGATTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(242-364)

Type II secretion system (T2SS), protein F (T2SSF)

(60-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baylyi ADP1

48.656

100

0.487
  pilC Pseudomonas stutzeri DSM 10701

57.468

82.796

0.476
  pilC Acinetobacter baumannii D1279779

47.838

99.462

0.476
  pilC Legionella pneumophila strain ERS1305867

53.674

84.14

0.452
  pilC Vibrio cholerae strain A1552

45.833

83.871

0.384
  pilG Neisseria meningitidis 44/76-A

43.987

84.946

0.374
  pilC Vibrio campbellii strain DS40M4

44.051

83.602

0.368
  pilG Neisseria gonorrhoeae MS11

43.131

84.14

0.363
  pilC Thermus thermophilus HB27

43.689

83.065

0.363

Multiple sequence alignment