Detailed information
Bioinformatically predicted
Overview
| Name | pilB | Type | Machinery gene |
| Locus tag | CN538_RS25715 | Genome accession | NZ_CP023559 |
| Coordinates | 4203103..4203501 (+) | Length | 132 a.a. |
| NCBI ID | WP_340638196.1 | Uniprot ID | - |
| Organism | Salinicola tamaricis strain F01 | ||
| Function | power the assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4198103..4208501
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CN538_RS19265 | - | 4198887..4200367 (-) | 1481 | Protein_4274 | TrkH family potassium uptake protein | - |
| CN538_RS19270 | - | 4200591..4200875 (+) | 285 | WP_106420471.1 | hypothetical protein | - |
| CN538_RS19275 | - | 4201021..4201521 (-) | 501 | WP_106420472.1 | pilin | - |
| CN538_RS19280 | pilB | 4201772..4203088 (+) | 1317 | WP_340638195.1 | ATPase, T2SS/T4P/T4SS family | Machinery gene |
| CN538_RS25715 | pilB | 4203103..4203501 (+) | 399 | WP_340638196.1 | hypothetical protein | Machinery gene |
| CN538_RS19285 | pilC | 4203694..4204812 (+) | 1119 | WP_242495401.1 | type II secretion system F family protein | Machinery gene |
| CN538_RS19290 | pilD | 4204898..4205758 (+) | 861 | WP_242495402.1 | A24 family peptidase | Machinery gene |
| CN538_RS19295 | coaE | 4205755..4206420 (+) | 666 | WP_106420473.1 | dephospho-CoA kinase | - |
| CN538_RS19300 | yacG | 4206417..4206659 (+) | 243 | WP_106420474.1 | DNA gyrase inhibitor YacG | - |
| CN538_RS19305 | - | 4206750..4207703 (-) | 954 | WP_106420475.1 | Nudix family hydrolase | - |
Sequence
Protein
Download Length: 132 a.a. Molecular weight: 14293.47 Da Isoelectric Point: 7.0816
>NTDB_id=248402 CN538_RS25715 WP_340638196.1 4203103..4203501(+) (pilB) [Salinicola tamaricis strain F01]
MGLASFNIASSVSLIIAQRLARRLCPHCRVPTQVPDEVLLGEGVSQARLATATLYRPGGCDRCTLGYKGRQGIYEVVPID
DAMSQLIMRDGHALDLAQLARERGYPGLRQSAIELALSGVTSLEEVNRVTLD
MGLASFNIASSVSLIIAQRLARRLCPHCRVPTQVPDEVLLGEGVSQARLATATLYRPGGCDRCTLGYKGRQGIYEVVPID
DAMSQLIMRDGHALDLAQLARERGYPGLRQSAIELALSGVTSLEEVNRVTLD
Nucleotide
Download Length: 399 bp
>NTDB_id=248402 CN538_RS25715 WP_340638196.1 4203103..4203501(+) (pilB) [Salinicola tamaricis strain F01]
ATGGGGCTGGCAAGCTTCAATATCGCCAGTTCGGTGTCGCTGATCATCGCGCAGCGTCTGGCGCGCCGGCTCTGCCCCCA
CTGCCGGGTGCCGACTCAGGTGCCCGACGAGGTGCTGCTCGGCGAGGGCGTCAGCCAAGCGCGTCTGGCCACCGCCACGC
TCTATCGCCCAGGCGGCTGCGACCGCTGTACGCTGGGCTACAAGGGTCGCCAGGGAATCTATGAAGTGGTGCCTATCGAT
GACGCCATGAGCCAGTTGATCATGCGTGATGGCCACGCCCTGGACCTGGCGCAGTTGGCGCGCGAGCGCGGCTATCCCGG
CCTGCGCCAAAGCGCCATCGAGCTGGCGCTCAGCGGCGTGACCAGCCTGGAGGAAGTCAACCGCGTGACCCTCGACTGA
ATGGGGCTGGCAAGCTTCAATATCGCCAGTTCGGTGTCGCTGATCATCGCGCAGCGTCTGGCGCGCCGGCTCTGCCCCCA
CTGCCGGGTGCCGACTCAGGTGCCCGACGAGGTGCTGCTCGGCGAGGGCGTCAGCCAAGCGCGTCTGGCCACCGCCACGC
TCTATCGCCCAGGCGGCTGCGACCGCTGTACGCTGGGCTACAAGGGTCGCCAGGGAATCTATGAAGTGGTGCCTATCGAT
GACGCCATGAGCCAGTTGATCATGCGTGATGGCCACGCCCTGGACCTGGCGCAGTTGGCGCGCGAGCGCGGCTATCCCGG
CCTGCGCCAAAGCGCCATCGAGCTGGCGCTCAGCGGCGTGACCAGCCTGGAGGAAGTCAACCGCGTGACCCTCGACTGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilB | Acinetobacter baylyi ADP1 |
52.273 |
100 |
0.523 |
| pilF | Neisseria gonorrhoeae MS11 |
48.148 |
100 |
0.492 |
| pilB | Acinetobacter baumannii D1279779 |
49.242 |
100 |
0.492 |
| pilB | Legionella pneumophila strain ERS1305867 |
48.12 |
100 |
0.485 |
| pilB | Vibrio campbellii strain DS40M4 |
45.038 |
99.242 |
0.447 |
| pilB | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
43.939 |
100 |
0.439 |
| pilB | Vibrio parahaemolyticus RIMD 2210633 |
43.511 |
99.242 |
0.432 |
| pilB | Vibrio cholerae strain A1552 |
41.221 |
99.242 |
0.409 |
| pilF | Thermus thermophilus HB27 |
39.37 |
96.212 |
0.379 |