Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   CN538_RS19290 Genome accession   NZ_CP023559
Coordinates   4204898..4205758 (+) Length   286 a.a.
NCBI ID   WP_242495402.1    Uniprot ID   -
Organism   Salinicola tamaricis strain F01     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4199898..4210758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CN538_RS19270 - 4200591..4200875 (+) 285 WP_106420471.1 hypothetical protein -
  CN538_RS19275 - 4201021..4201521 (-) 501 WP_106420472.1 pilin -
  CN538_RS19280 pilB 4201772..4203088 (+) 1317 WP_340638195.1 ATPase, T2SS/T4P/T4SS family Machinery gene
  CN538_RS25715 pilB 4203103..4203501 (+) 399 WP_340638196.1 hypothetical protein Machinery gene
  CN538_RS19285 pilC 4203694..4204812 (+) 1119 WP_242495401.1 type II secretion system F family protein Machinery gene
  CN538_RS19290 pilD 4204898..4205758 (+) 861 WP_242495402.1 A24 family peptidase Machinery gene
  CN538_RS19295 coaE 4205755..4206420 (+) 666 WP_106420473.1 dephospho-CoA kinase -
  CN538_RS19300 yacG 4206417..4206659 (+) 243 WP_106420474.1 DNA gyrase inhibitor YacG -
  CN538_RS19305 - 4206750..4207703 (-) 954 WP_106420475.1 Nudix family hydrolase -
  CN538_RS19310 argJ 4207785..4208993 (-) 1209 WP_106420476.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 30984.13 Da        Isoelectric Point: 8.9766

>NTDB_id=248398 CN538_RS19290 WP_242495402.1 4204898..4205758(+) (pilD) [Salinicola tamaricis strain F01]
MSQLSPWLLWPLAFVFGACLGSFINVVIVRLPVMLMRRWRAEARTALELEAEPMPRYDLLLPRSHCPACGQFIVWHDNLP
LIGWLKRRGRCAACSAPISPQYPLIELLAGGVTLAALAIHGPSVETLWLVGACLVLLALAVIDWRTQLLPDALTLPLLWA
GLLYQWAYHPLWLGSAVLGAAAGYLVLWAVYWLFKLTTGKEGMGHGDFKLMAALGAWLGWQNLPLLLLLSAGAGTLIGIA
LIIGRRHVRGQPLPFGPFIALAGWVALLVGAPLQAGYQALLLGGAG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=248398 CN538_RS19290 WP_242495402.1 4204898..4205758(+) (pilD) [Salinicola tamaricis strain F01]
TTGTCACAACTTTCCCCCTGGCTGCTGTGGCCCCTGGCGTTCGTGTTTGGCGCCTGCCTGGGCAGCTTCATCAACGTGGT
GATCGTGCGCCTGCCGGTGATGCTGATGCGGCGCTGGCGCGCCGAGGCGCGAACCGCGCTCGAGCTGGAAGCCGAGCCCA
TGCCTCGCTACGACCTGCTGCTGCCGCGCTCGCACTGCCCCGCCTGCGGCCAGTTCATCGTCTGGCACGACAACCTGCCG
CTGATCGGCTGGCTCAAGCGCCGCGGCCGCTGCGCCGCCTGCAGCGCACCGATCAGCCCGCAGTACCCGCTGATCGAGCT
GCTCGCCGGCGGCGTGACCCTGGCCGCACTGGCGATCCACGGACCTAGCGTCGAAACCCTGTGGCTGGTCGGCGCCTGCC
TGGTGCTGCTGGCGCTGGCGGTGATCGACTGGCGCACCCAACTGCTGCCGGATGCGCTCACCCTACCGCTGCTGTGGGCC
GGTCTGCTCTACCAGTGGGCCTACCACCCGCTGTGGCTCGGCAGCGCCGTGCTCGGCGCGGCCGCCGGCTACCTGGTGCT
GTGGGCGGTGTACTGGCTGTTCAAGCTGACCACCGGCAAGGAGGGCATGGGTCATGGCGACTTCAAGCTGATGGCGGCGC
TGGGCGCCTGGCTGGGCTGGCAGAATCTGCCCTTGCTGCTGCTGCTCTCCGCTGGCGCCGGTACCCTGATCGGTATTGCG
CTGATCATCGGCCGCCGCCACGTGCGCGGCCAGCCGCTACCGTTCGGCCCGTTCATTGCCCTGGCCGGCTGGGTCGCCCT
GCTGGTAGGGGCGCCGCTGCAGGCCGGCTATCAGGCGCTGCTGCTGGGAGGTGCAGGATGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(15-116)

Type IV leader peptidase family (Peptidase_A24)

(133-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio campbellii strain DS40M4

48.601

100

0.486
  pilD Vibrio cholerae strain A1552

50.929

94.056

0.479
  pilD Acinetobacter baumannii D1279779

47.547

92.657

0.441
  pilD Acinetobacter nosocomialis M2

47.727

92.308

0.441
  pilD Neisseria gonorrhoeae MS11

44.195

93.357

0.413

Multiple sequence alignment