Detailed information
Bioinformatically predicted
Overview
| Name | pilL-C | Type | Machinery gene |
| Locus tag | N16961_RS07530 | Genome accession | NZ_CP028827 |
| Coordinates | 1598661..1599041 (+) | Length | 126 a.a. |
| NCBI ID | WP_000045526.1 | Uniprot ID | Q6BBL2 |
| Organism | Vibrio cholerae strain N16961 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1593661..1604041
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N16961_RS07505 (N16961_VC01465) | - | 1594254..1594910 (+) | 657 | WP_000974695.1 | HEAT repeat domain-containing protein | - |
| N16961_RS07510 (N16961_VC01466) | - | 1594921..1595787 (+) | 867 | WP_001002908.1 | protein-glutamate O-methyltransferase CheR | - |
| N16961_RS07515 (N16961_VC01467) | - | 1595765..1596136 (+) | 372 | WP_000757478.1 | PleD family two-component system response regulator | - |
| N16961_RS07520 (N16961_VC01468) | - | 1596145..1598418 (+) | 2274 | WP_001178898.1 | chemotaxis protein CheA | - |
| N16961_RS07525 (N16961_VC01469) | - | 1598408..1598668 (+) | 261 | WP_001143862.1 | hypothetical protein | - |
| N16961_RS07530 (N16961_VC01470) | pilL-C | 1598661..1599041 (+) | 381 | WP_000045526.1 | response regulator | Machinery gene |
| N16961_RS07535 (N16961_VC01471) | - | 1599049..1600284 (+) | 1236 | WP_000621946.1 | methyl-accepting chemotaxis protein | - |
| N16961_RS07540 (N16961_VC01472) | - | 1600339..1600653 (-) | 315 | WP_000312387.1 | multidrug efflux SMR transporter | - |
| N16961_RS07545 (N16961_VC01473) | - | 1600799..1602313 (-) | 1515 | WP_000411504.1 | cryptochrome/deoxyribodipyrimidine photo-lyase family protein | - |
| N16961_RS07550 (N16961_VC01474) | - | 1602469..1603875 (-) | 1407 | WP_000545341.1 | MDR family MFS transporter | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13674.04 Da Isoelectric Point: 9.8959
>NTDB_id=248398 N16961_RS07530 WP_000045526.1 1598661..1599041(+) (pilL-C) [Vibrio cholerae strain N16961]
MSKSILIVDDSSTVLMSVDAMLSKLGFQVEKAKDGVEAETRLKGGLKVNLIITDINMPRMDGIELISKIRAIASYRFTPI
LVLTTEQEQAKRNEARAKGATGYLVKPVTGDQLKAVIQQVLPGSIS
MSKSILIVDDSSTVLMSVDAMLSKLGFQVEKAKDGVEAETRLKGGLKVNLIITDINMPRMDGIELISKIRAIASYRFTPI
LVLTTEQEQAKRNEARAKGATGYLVKPVTGDQLKAVIQQVLPGSIS
Nucleotide
Download Length: 381 bp
>NTDB_id=248398 N16961_RS07530 WP_000045526.1 1598661..1599041(+) (pilL-C) [Vibrio cholerae strain N16961]
ATGTCTAAAAGCATTCTGATTGTTGATGACTCTAGTACTGTTCTTATGAGTGTCGATGCCATGCTCTCTAAACTGGGTTT
CCAAGTCGAGAAAGCAAAAGATGGCGTTGAAGCAGAAACTCGACTCAAAGGTGGTCTAAAAGTCAACCTCATCATTACCG
ACATCAATATGCCTCGTATGGATGGTATTGAGTTGATTAGCAAAATTCGTGCGATTGCTTCATATCGCTTTACCCCAATT
TTAGTGCTCACTACAGAACAAGAACAAGCCAAACGCAATGAGGCTCGCGCCAAAGGTGCAACAGGTTATTTAGTTAAGCC
CGTAACGGGAGATCAATTGAAAGCCGTGATTCAACAAGTTCTCCCAGGTAGTATTTCGTGA
ATGTCTAAAAGCATTCTGATTGTTGATGACTCTAGTACTGTTCTTATGAGTGTCGATGCCATGCTCTCTAAACTGGGTTT
CCAAGTCGAGAAAGCAAAAGATGGCGTTGAAGCAGAAACTCGACTCAAAGGTGGTCTAAAAGTCAACCTCATCATTACCG
ACATCAATATGCCTCGTATGGATGGTATTGAGTTGATTAGCAAAATTCGTGCGATTGCTTCATATCGCTTTACCCCAATT
TTAGTGCTCACTACAGAACAAGAACAAGCCAAACGCAATGAGGCTCGCGCCAAAGGTGCAACAGGTTATTTAGTTAAGCC
CGTAACGGGAGATCAATTGAAAGCCGTGATTCAACAAGTTCTCCCAGGTAGTATTTCGTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilL-C | Synechocystis sp. PCC 6803 |
39.2 |
99.206 |
0.389 |