Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   CO686_RS01330 Genome accession   NZ_CP023507
Coordinates   270883..271278 (+) Length   131 a.a.
NCBI ID   WP_000282436.1    Uniprot ID   A0A0F2DZ08
Organism   Streptococcus oralis strain FDAARGOS_367     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 265883..276278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO686_RS01300 (CO686_01300) rpoE 266079..266669 (+) 591 WP_000418415.1 DNA-directed RNA polymerase subunit delta -
  CO686_RS01305 (CO686_01305) - 266986..268593 (+) 1608 WP_044020289.1 CTP synthase -
  CO686_RS01310 (CO686_01310) - 268747..269046 (+) 300 WP_096753422.1 DUF4651 domain-containing protein -
  CO686_RS01315 (CO686_01315) - 269043..269360 (+) 318 WP_096753423.1 thioredoxin family protein -
  CO686_RS01320 (CO686_01320) ytpR 269376..270002 (+) 627 WP_096753424.1 YtpR family tRNA-binding protein -
  CO686_RS01325 (CO686_01325) - 270044..270805 (+) 762 WP_049550095.1 SDR family NAD(P)-dependent oxidoreductase -
  CO686_RS01330 (CO686_01330) ssbB/cilA 270883..271278 (+) 396 WP_000282436.1 single-stranded DNA-binding protein Machinery gene
  CO686_RS01335 (CO686_01335) groES 271563..271847 (+) 285 WP_000917334.1 co-chaperone GroES -
  CO686_RS01340 (CO686_01340) groL 271863..273485 (+) 1623 WP_000031557.1 chaperonin GroEL -
  CO686_RS01345 (CO686_01345) - 273610..274377 (+) 768 WP_000567567.1 epoxyqueuosine reductase QueH -
  CO686_RS01350 (CO686_01350) - 274448..274981 (-) 534 WP_000775317.1 DUF402 domain-containing protein -
  CO686_RS01355 (CO686_01355) recX 275070..275846 (-) 777 WP_000705066.1 recombination regulator RecX -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14833.75 Da        Isoelectric Point: 5.9409

>NTDB_id=247845 CO686_RS01330 WP_000282436.1 270883..271278(+) (ssbB/cilA) [Streptococcus oralis strain FDAARGOS_367]
MYNKVILIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNLVLWGKLAETLASYATKGSLISVDGELRTR
RFEKNGQMNYVTEVLATGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=247845 CO686_RS01330 WP_000282436.1 270883..271278(+) (ssbB/cilA) [Streptococcus oralis strain FDAARGOS_367]
ATGTATAATAAAGTTATTCTTATTGGACGTTTAACGTCTACACCAGAATTGCACAAAACCAACAATGACAAGTCAGTAGC
GCGTGCAACTATTGCTGTGAACCGTCGTTACAAAGACCAAAACGGGGAACGTGAAGCTGACTTTGTCAATTTGGTTCTTT
GGGGGAAATTGGCTGAAACCTTGGCAAGCTACGCAACTAAAGGTAGTCTTATCTCTGTGGATGGAGAACTTCGTACCCGT
CGCTTTGAGAAAAATGGCCAGATGAACTATGTGACTGAAGTCCTTGCCACAGGATTCCAACTTTTGGAAAGCCGCGCCCA
ACGTGCTATGCGTGAAAATAACGCTGGACAGGATTTGGCAGACTTGGTCTTGGAAGAGGAAGAATTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F2DZ08

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae TIGR4

97.71

100

0.977
  ssbB/cilA Streptococcus mitis NCTC 12261

96.947

100

0.969
  ssbB/cilA Streptococcus pneumoniae Rx1

96.947

100

0.969
  ssbB/cilA Streptococcus pneumoniae D39

96.947

100

0.969
  ssbB/cilA Streptococcus pneumoniae R6

96.947

100

0.969
  ssbB/cilA Streptococcus mitis SK321

96.947

100

0.969
  ssbA Streptococcus mutans UA159

74.809

100

0.748
  ssbB Streptococcus sobrinus strain NIDR 6715-7

72.519

100

0.725
  ssbB Lactococcus lactis subsp. cremoris KW2

61.607

85.496

0.527
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.887

80.916

0.42
  ssb Latilactobacillus sakei subsp. sakei 23K

47.788

86.26

0.412
  ssbB Bacillus subtilis subsp. subtilis str. 168

46.296

82.443

0.382

Multiple sequence alignment