Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | FORC72_RS03160 | Genome accession | NZ_CP023472 |
| Coordinates | 596118..596537 (-) | Length | 139 a.a. |
| NCBI ID | WP_029852775.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus strain FORC_072 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 591118..601537
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FORC72_RS03140 (FORC72_0497) | coaE | 591631..592245 (-) | 615 | WP_005480887.1 | dephospho-CoA kinase | - |
| FORC72_RS03145 (FORC72_0498) | pilD | 592246..593115 (-) | 870 | WP_025536240.1 | A24 family peptidase | Machinery gene |
| FORC72_RS03150 (FORC72_0499) | pilC | 593180..594403 (-) | 1224 | WP_021822433.1 | type II secretion system F family protein | Machinery gene |
| FORC72_RS03155 (FORC72_0500) | pilB | 594427..596112 (-) | 1686 | WP_089204506.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| FORC72_RS03160 (FORC72_0501) | pilA | 596118..596537 (-) | 420 | WP_029852775.1 | pilin | Machinery gene |
| FORC72_RS03165 (FORC72_0502) | nadC | 596800..597687 (-) | 888 | WP_015297249.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| FORC72_RS03170 (FORC72_0503) | ampD | 597780..598331 (+) | 552 | WP_005484832.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| FORC72_RS03175 (FORC72_0504) | pdhR | 598737..599504 (+) | 768 | WP_005462576.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
Sequence
Protein
Download Length: 139 a.a. Molecular weight: 14248.24 Da Isoelectric Point: 5.7606
>NTDB_id=247339 FORC72_RS03160 WP_029852775.1 596118..596537(-) (pilA) [Vibrio parahaemolyticus strain FORC_072]
MKHSKQKKQQGFTLIELMIVVAIIGVLSAIAVPAYQNYVARSEAASGLGSIKSLVTPAELFYQENGTAAAATLAQLGVDG
AANDLGAITSTVANGVANLVFTFNANSSMTGETVTLTRSVAEGWTCAPSANVPALDGCR
MKHSKQKKQQGFTLIELMIVVAIIGVLSAIAVPAYQNYVARSEAASGLGSIKSLVTPAELFYQENGTAAAATLAQLGVDG
AANDLGAITSTVANGVANLVFTFNANSSMTGETVTLTRSVAEGWTCAPSANVPALDGCR
Nucleotide
Download Length: 420 bp
>NTDB_id=247339 FORC72_RS03160 WP_029852775.1 596118..596537(-) (pilA) [Vibrio parahaemolyticus strain FORC_072]
ATGAAACACAGTAAACAGAAAAAACAGCAAGGTTTTACCTTGATTGAATTGATGATTGTGGTGGCGATTATTGGTGTATT
GTCCGCAATTGCAGTTCCTGCATACCAAAACTATGTAGCTAGAAGTGAAGCGGCATCAGGACTTGGTAGTATAAAGTCCT
TAGTTACCCCAGCAGAGCTGTTCTATCAGGAAAATGGCACCGCTGCAGCTGCAACACTAGCCCAACTTGGGGTTGACGGT
GCAGCTAATGATCTAGGTGCAATAACATCAACAGTAGCGAATGGAGTAGCAAATTTAGTATTTACGTTCAATGCAAACAG
CTCAATGACAGGTGAAACAGTAACGTTGACTCGGTCTGTTGCTGAAGGTTGGACATGTGCACCAAGTGCAAACGTTCCTG
CATTAGACGGCTGTCGATAA
ATGAAACACAGTAAACAGAAAAAACAGCAAGGTTTTACCTTGATTGAATTGATGATTGTGGTGGCGATTATTGGTGTATT
GTCCGCAATTGCAGTTCCTGCATACCAAAACTATGTAGCTAGAAGTGAAGCGGCATCAGGACTTGGTAGTATAAAGTCCT
TAGTTACCCCAGCAGAGCTGTTCTATCAGGAAAATGGCACCGCTGCAGCTGCAACACTAGCCCAACTTGGGGTTGACGGT
GCAGCTAATGATCTAGGTGCAATAACATCAACAGTAGCGAATGGAGTAGCAAATTTAGTATTTACGTTCAATGCAAACAG
CTCAATGACAGGTGAAACAGTAACGTTGACTCGGTCTGTTGCTGAAGGTTGGACATGTGCACCAAGTGCAAACGTTCCTG
CATTAGACGGCTGTCGATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
71.014 |
99.281 |
0.705 |
| pilA | Pseudomonas aeruginosa PAK |
47.761 |
96.403 |
0.46 |
| pilA/pilA1 | Eikenella corrodens VA1 |
42.143 |
100 |
0.424 |
| pilA | Acinetobacter baumannii strain A118 |
41.86 |
92.806 |
0.388 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
39.259 |
97.122 |
0.381 |
| pilA | Vibrio cholerae strain A1552 |
39.259 |
97.122 |
0.381 |
| pilA | Vibrio cholerae C6706 |
39.259 |
97.122 |
0.381 |
| pilA2 | Legionella pneumophila str. Paris |
43.089 |
88.489 |
0.381 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
42.276 |
88.489 |
0.374 |