Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FORC72_RS03150 Genome accession   NZ_CP023472
Coordinates   593180..594403 (-) Length   407 a.a.
NCBI ID   WP_021822433.1    Uniprot ID   A0AA46L906
Organism   Vibrio parahaemolyticus strain FORC_072     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 588180..599403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC72_RS03110 (FORC72_0491) rpsP 588263..588511 (+) 249 WP_005379962.1 30S ribosomal protein S16 -
  FORC72_RS03115 (FORC72_0492) rimM 588540..589088 (+) 549 WP_005462552.1 ribosome maturation factor RimM -
  FORC72_RS03120 (FORC72_0493) trmD 589116..589859 (+) 744 WP_005462562.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  FORC72_RS03125 (FORC72_0494) rplS 589901..590254 (+) 354 WP_005462554.1 50S ribosomal protein L19 -
  FORC72_RS03130 (FORC72_0495) yacG 590600..590794 (-) 195 WP_005462546.1 DNA gyrase inhibitor YacG -
  FORC72_RS03135 (FORC72_0496) zapD 590863..591603 (-) 741 WP_005480890.1 cell division protein ZapD -
  FORC72_RS03140 (FORC72_0497) coaE 591631..592245 (-) 615 WP_005480887.1 dephospho-CoA kinase -
  FORC72_RS03145 (FORC72_0498) pilD 592246..593115 (-) 870 WP_025536240.1 A24 family peptidase Machinery gene
  FORC72_RS03150 (FORC72_0499) pilC 593180..594403 (-) 1224 WP_021822433.1 type II secretion system F family protein Machinery gene
  FORC72_RS03155 (FORC72_0500) pilB 594427..596112 (-) 1686 WP_089204506.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FORC72_RS03160 (FORC72_0501) pilA 596118..596537 (-) 420 WP_029852775.1 pilin Machinery gene
  FORC72_RS03165 (FORC72_0502) nadC 596800..597687 (-) 888 WP_015297249.1 carboxylating nicotinate-nucleotide diphosphorylase -
  FORC72_RS03170 (FORC72_0503) ampD 597780..598331 (+) 552 WP_005484832.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 45232.44 Da        Isoelectric Point: 10.4368

>NTDB_id=247337 FORC72_RS03150 WP_021822433.1 593180..594403(-) (pilC) [Vibrio parahaemolyticus strain FORC_072]
MKITTPQLKNFRWKGVNSSGKKTSGQTLAMSEIEVRERLDAQHIKIKKLKKSSISFLTKLSHRVKGKDITVFTRQISTML
VTGVPLVQALKLVSDNHKKAEMKSILMSVTRAVEAGTPMSKAMRTASNHFDPLYTDLIATGEQSGNLAEVFERLATYREK
NEQLRAKVIKALIYPAMVILVALGVSFIMLTKVIPEFEKMFVGFGAELPWFTRQVLDLSAWTQNWSPFIALGSISVFISA
RVLSKRSDSFRLMLNRSVLKFPVLGAVLSKAAIAKFSRTLATSFTAGIPILTSLKTTSKTSGNMHYQLAIEEVYRDTAAG
MPMYVAMRNCNVFPELVLQMVMIGEESGRLDDMLNKVATIYEFEVDNTVDNLSKILEPLIIVFLGIVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=247337 FORC72_RS03150 WP_021822433.1 593180..594403(-) (pilC) [Vibrio parahaemolyticus strain FORC_072]
ATGAAAATTACGACACCACAATTAAAGAACTTCCGTTGGAAAGGCGTCAACAGCTCAGGGAAAAAGACCTCTGGTCAAAC
TCTGGCAATGAGCGAAATCGAAGTACGAGAGCGCTTAGATGCCCAGCACATCAAAATCAAAAAGCTAAAGAAAAGCAGCA
TCTCTTTTTTGACCAAACTTAGCCATCGCGTAAAAGGAAAAGACATCACGGTTTTCACTCGTCAAATCTCAACGATGCTA
GTAACCGGTGTGCCGCTAGTACAAGCATTGAAATTGGTCTCTGATAACCACAAAAAAGCGGAAATGAAATCCATTTTGAT
GAGTGTAACTCGGGCTGTTGAAGCGGGTACGCCGATGTCCAAAGCGATGCGTACCGCCAGCAACCATTTTGACCCGCTAT
ATACCGACCTGATTGCGACAGGAGAACAATCGGGCAACTTAGCCGAAGTGTTCGAACGCTTAGCTACCTACAGGGAAAAA
AATGAGCAGCTTAGAGCCAAAGTGATCAAGGCTCTAATATATCCAGCCATGGTTATTCTAGTTGCACTGGGAGTATCGTT
TATCATGCTAACCAAGGTCATTCCCGAGTTTGAAAAAATGTTTGTTGGCTTTGGCGCTGAATTGCCATGGTTTACAAGGC
AAGTCTTAGATCTTTCCGCTTGGACACAAAACTGGAGCCCATTTATCGCACTTGGCTCCATCAGTGTATTTATCTCCGCG
AGAGTACTCTCTAAGCGTTCAGATTCTTTTCGCTTAATGCTCAACCGCTCTGTGCTTAAGTTTCCAGTCCTTGGGGCAGT
TTTATCGAAAGCCGCTATCGCAAAATTTAGTCGAACCCTCGCTACGAGCTTTACGGCGGGCATTCCGATTTTAACCAGTT
TAAAAACCACCTCGAAAACGTCCGGAAATATGCATTATCAATTGGCTATCGAAGAGGTTTATCGCGATACCGCAGCAGGA
ATGCCGATGTATGTTGCAATGCGCAATTGCAACGTGTTCCCTGAGTTGGTGCTGCAAATGGTTATGATCGGCGAAGAATC
CGGCCGACTTGACGATATGCTCAATAAAGTCGCCACAATTTACGAGTTTGAAGTGGACAACACCGTCGATAACCTCAGTA
AAATCTTAGAACCATTAATTATCGTTTTTTTAGGTATCGTTGTCGGTGGCTTGGTCACAGCAATGTACTTGCCAATCTTT
AACTTAATGAGTGTATTGGGCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

85.749

100

0.857
  pilC Vibrio cholerae strain A1552

74.265

100

0.744
  pilC Acinetobacter baylyi ADP1

42.75

98.28

0.42
  pilC Acinetobacter baumannii D1279779

41.439

99.017

0.41
  pilG Neisseria gonorrhoeae MS11

40.494

99.509

0.403
  pilG Neisseria meningitidis 44/76-A

40.247

99.509

0.4
  pilC Pseudomonas stutzeri DSM 10701

40.909

97.297

0.398
  pilC Legionella pneumophila strain ERS1305867

39.803

100

0.398

Multiple sequence alignment