Detailed information NTG0247336

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: FORC72_RS03145
• Genome accession: NZ_CP023472
• Coordinates: 592246..593115 (-)
• Length: 289 a.a.
• NCBI ID: WP_025536240.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain FORC_072
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 587246..598115

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FORC72_RS03110 (FORC72_0491)	rpsP	588263..588511 (+)	249	WP_005379962.1	30S ribosomal protein S16	-
FORC72_RS03115 (FORC72_0492)	rimM	588540..589088 (+)	549	WP_005462552.1	ribosome maturation factor RimM	-
FORC72_RS03120 (FORC72_0493)	trmD	589116..589859 (+)	744	WP_005462562.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
FORC72_RS03125 (FORC72_0494)	rplS	589901..590254 (+)	354	WP_005462554.1	50S ribosomal protein L19	-
FORC72_RS03130 (FORC72_0495)	yacG	590600..590794 (-)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
FORC72_RS03135 (FORC72_0496)	zapD	590863..591603 (-)	741	WP_005480890.1	cell division protein ZapD	-
FORC72_RS03140 (FORC72_0497)	coaE	591631..592245 (-)	615	WP_005480887.1	dephospho-CoA kinase	-
FORC72_RS03145 (FORC72_0498)	pilD	592246..593115 (-)	870	WP_025536240.1	A24 family peptidase	Machinery gene
FORC72_RS03150 (FORC72_0499)	pilC	593180..594403 (-)	1224	WP_021822433.1	type II secretion system F family protein	Machinery gene
FORC72_RS03155 (FORC72_0500)	pilB	594427..596112 (-)	1686	WP_089204506.1	type IV-A pilus assembly ATPase PilB	Machinery gene
FORC72_RS03160 (FORC72_0501)	pilA	596118..596537 (-)	420	WP_029852775.1	pilin	Machinery gene
FORC72_RS03165 (FORC72_0502)	nadC	596800..597687 (-)	888	WP_015297249.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32343.46 Da
• Isoelectric Point: 7.1970

>NTDB_id=247336 FORC72_RS03145 WP_025536240.1 592246..593115(-) (pilD) [Vibrio parahaemolyticus strain FORC_072]
MEVLQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=247336 FORC72_RS03145 WP_025536240.1 592246..593115(-) (pilD) [Vibrio parahaemolyticus strain FORC_072]
ATGGAAGTGTTGCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTGGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTAAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCAGTAATCAGCTGGCTATTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGCTATCC
GCTGATAGAATTACTCACTGCTGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGGGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGGTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCCGCCCTTGGTGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTCGTTCAGTTACGACTACAAAAACAAGGTATAGAGAAAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGTAAGCTTAATCTGGGGCGATCAAATTCTAAGTTGGTACTTCACGTCGATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	89.273	100	0.893
pilD	Vibrio cholerae strain A1552	73.264	99.654	0.73
pilD	Acinetobacter baumannii D1279779	52.612	92.734	0.488
pilD	Acinetobacter nosocomialis M2	52.239	92.734	0.484
pilD	Neisseria gonorrhoeae MS11	46.739	95.502	0.446