Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   CMV05_RS13825 Genome accession   NZ_CP023310
Coordinates   2930872..2932587 (-) Length   571 a.a.
NCBI ID   WP_096036693.1    Uniprot ID   -
Organism   Vibrio anguillarum strain VIB12 isolate Sea bass     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2925872..2937587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CMV05_RS13805 (CMV05_13805) - 2926603..2927433 (-) 831 WP_013855892.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  CMV05_RS13810 (CMV05_13810) - 2927503..2929002 (-) 1500 WP_081245061.1 AAA family ATPase -
  CMV05_RS13815 (CMV05_13815) aroB 2929051..2930139 (-) 1089 WP_081245062.1 3-dehydroquinate synthase -
  CMV05_RS13820 (CMV05_13820) aroK 2930164..2930685 (-) 522 WP_010317691.1 shikimate kinase AroK -
  CMV05_RS13825 (CMV05_13825) pilQ 2930872..2932587 (-) 1716 WP_096036693.1 type IV pilus secretin PilQ family protein Machinery gene
  CMV05_RS13830 (CMV05_13830) pilP 2932611..2933132 (-) 522 WP_013855888.1 pilus assembly protein PilP Machinery gene
  CMV05_RS13835 (CMV05_13835) pilO 2933119..2933712 (-) 594 WP_013855887.1 type 4a pilus biogenesis protein PilO Machinery gene
  CMV05_RS13840 (CMV05_13840) pilN 2933705..2934307 (-) 603 WP_081245065.1 PilN domain-containing protein Machinery gene
  CMV05_RS13845 (CMV05_13845) pilM 2934297..2935307 (-) 1011 WP_081245066.1 type IV pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 571 a.a.        Molecular weight: 62258.76 Da        Isoelectric Point: 4.9276

>NTDB_id=245877 CMV05_RS13825 WP_096036693.1 2930872..2932587(-) (pilQ) [Vibrio anguillarum strain VIB12 isolate Sea bass]
MIKGLQTQMTMVFRSLLFGLLLSVAGLSVAAETAQTNELKGIDFRVNKNKDAVLIVELASPSTVVNVQKVADGLQIELLK
TDVSNEKLYVLDVKDFATVVESIEVLRKEPSTQLLATIHGEFKYDYSLKGKYLEVVIGKLKEQEKPKPKSILEKEGKLIS
INFQDIPVRNVLQLIADYNAFNLVVSDSVTGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILVAPKEELDLREKQQL
EKARLAEELGDLRSEIIKINFAKASDIAQMIGGEGAVSMLSERGSISIDERTNSLLIRELAENIVVIRQIIESLDIPVKQ
VQIEARIVTVNEGNLDELGVRRGFTSTNGNNTAGGSIESNLFQVGKLGESTLPVDDFLNVNLAATSANASSIAFQVAKLG
SDMLLDLELSALQRESKAEIISSPRLITTNKKPAYIEQGTEIPYLESSSSGATTVAFKKAVLSLKVTPQITPDNRLVLDL
SVTQDRPGDIVKTGTGEAVAINTQRIGTQVLVNNGETVVLGGIFQHSVNNTVDKVPLLGDLPLLGALFRRSYEQVGKSEL
LIFVTPKVVIQ

Nucleotide


Download         Length: 1716 bp        

>NTDB_id=245877 CMV05_RS13825 WP_096036693.1 2930872..2932587(-) (pilQ) [Vibrio anguillarum strain VIB12 isolate Sea bass]
ATGATTAAAGGACTACAGACACAAATGACTATGGTATTTCGGAGCCTCTTATTTGGCTTATTATTGAGTGTGGCAGGGCT
AAGTGTGGCGGCAGAAACGGCGCAGACCAACGAGCTTAAAGGCATTGATTTTCGAGTCAATAAAAACAAAGACGCTGTAT
TGATTGTTGAACTCGCATCACCTTCGACAGTAGTTAATGTGCAGAAAGTGGCTGACGGTTTACAAATTGAACTGCTTAAG
ACGGATGTCTCCAATGAGAAACTCTATGTCTTAGACGTCAAAGATTTTGCAACCGTTGTTGAGAGTATCGAGGTATTGCG
CAAAGAGCCAAGTACACAGTTACTGGCGACCATTCATGGCGAGTTTAAGTATGATTACAGCTTGAAAGGGAAATACCTTG
AGGTGGTGATTGGCAAACTGAAAGAACAAGAAAAACCTAAGCCGAAGAGCATTCTTGAGAAAGAGGGCAAGCTTATCTCG
ATTAACTTTCAAGATATTCCTGTGCGAAATGTTTTGCAGCTTATCGCAGATTATAACGCGTTTAACCTAGTCGTCTCAGA
TTCGGTCACTGGTAACCTGACGCTACGGCTTGATGGCGTGCCTTGGCAGCAAGTGCTCGATATCATTTTGCAAGTCAAGG
GATTAGATAAGCGTGTTGACGGCAATGTGATTTTAGTTGCACCTAAAGAAGAGTTGGATTTACGTGAAAAGCAGCAGCTT
GAAAAGGCACGTTTGGCTGAAGAGTTGGGCGATCTGCGTTCTGAAATCATCAAAATTAATTTTGCTAAGGCGTCTGATAT
TGCGCAGATGATTGGCGGCGAAGGGGCAGTCAGCATGTTGTCTGAGCGAGGTTCCATCAGTATCGACGAGCGAACCAACT
CACTGCTGATCCGCGAATTGGCTGAGAATATTGTGGTGATACGCCAAATTATTGAATCGCTCGATATCCCGGTCAAACAG
GTACAGATTGAAGCGCGCATTGTTACGGTCAACGAAGGTAATTTGGATGAACTTGGCGTACGCAGGGGCTTTACTTCGAC
CAATGGCAACAACACCGCAGGCGGAAGTATTGAAAGTAATTTATTCCAAGTGGGCAAGTTGGGGGAAAGCACATTGCCCG
TTGATGACTTCCTTAACGTAAACTTAGCGGCGACCTCTGCTAACGCCTCAAGTATTGCCTTCCAAGTGGCTAAGTTGGGG
TCGGATATGTTGTTGGATTTAGAGCTTTCAGCGCTGCAACGTGAGTCGAAAGCGGAGATTATTTCCAGCCCTCGTTTGAT
CACGACAAACAAGAAGCCAGCTTATATCGAGCAGGGTACGGAGATCCCTTATCTGGAGTCTTCTTCCAGCGGGGCAACGA
CGGTCGCCTTCAAAAAAGCGGTGCTGAGTTTAAAAGTGACGCCGCAGATAACGCCGGATAATCGTTTAGTGTTAGATCTC
AGTGTCACTCAAGACCGGCCTGGGGATATTGTAAAAACAGGGACGGGAGAAGCGGTTGCAATTAATACTCAGCGTATTGG
CACTCAAGTATTGGTCAATAATGGAGAAACCGTGGTCCTTGGTGGAATATTCCAACATAGCGTCAACAATACGGTTGATA
AGGTACCATTACTTGGTGATTTGCCATTACTTGGTGCATTGTTCCGCCGTTCCTATGAGCAAGTGGGCAAAAGTGAGCTG
CTGATTTTCGTGACACCGAAAGTCGTCATTCAATAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(255-320)

Bacterial type II and III secretion system protein (Secretin)

(411-569)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio cholerae strain A1552

82.487

100

0.825
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

82.487

100

0.825
  pilQ Vibrio campbellii strain DS40M4

79.129

96.497

0.764
  pilQ Legionella pneumophila strain Lp02

42.222

94.571

0.399
  pilQ Legionella pneumophila strain ERS1305867

42.222

94.571

0.399
  comQ Acinetobacter baylyi ADP1

39.247

97.723

0.384
  pilQ Pseudomonas aeruginosa PAK

39.493

96.673

0.382
  pilQ Acinetobacter baumannii D1279779

36.661

100

0.373
  pilQ Acinetobacter baumannii strain A118

36.661

100

0.373

Multiple sequence alignment