Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | CMV05_RS13835 | Genome accession | NZ_CP023310 |
| Coordinates | 2933119..2933712 (-) | Length | 197 a.a. |
| NCBI ID | WP_013855887.1 | Uniprot ID | A0A233HKC5 |
| Organism | Vibrio anguillarum strain VIB12 isolate Sea bass | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2928119..2938712
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CMV05_RS13815 (CMV05_13815) | aroB | 2929051..2930139 (-) | 1089 | WP_081245062.1 | 3-dehydroquinate synthase | - |
| CMV05_RS13820 (CMV05_13820) | aroK | 2930164..2930685 (-) | 522 | WP_010317691.1 | shikimate kinase AroK | - |
| CMV05_RS13825 (CMV05_13825) | pilQ | 2930872..2932587 (-) | 1716 | WP_096036693.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| CMV05_RS13830 (CMV05_13830) | pilP | 2932611..2933132 (-) | 522 | WP_013855888.1 | pilus assembly protein PilP | Machinery gene |
| CMV05_RS13835 (CMV05_13835) | pilO | 2933119..2933712 (-) | 594 | WP_013855887.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| CMV05_RS13840 (CMV05_13840) | pilN | 2933705..2934307 (-) | 603 | WP_081245065.1 | PilN domain-containing protein | Machinery gene |
| CMV05_RS13845 (CMV05_13845) | pilM | 2934297..2935307 (-) | 1011 | WP_081245066.1 | type IV pilus assembly protein PilM | Machinery gene |
| CMV05_RS13850 (CMV05_13850) | - | 2935457..2937955 (+) | 2499 | WP_096036694.1 | PBP1A family penicillin-binding protein | - |
Sequence
Protein
Download Length: 197 a.a. Molecular weight: 23039.37 Da Isoelectric Point: 4.3879
>NTDB_id=245879 CMV05_RS13835 WP_013855887.1 2933119..2933712(-) (pilO) [Vibrio anguillarum strain VIB12 isolate Sea bass]
MTSFQDLDMDEMAEWPLLPQLLVILVLMLIIQGVGAWFYLMPQNEQLQNLKQQEEVLKSTLRIKASKAATLPQLQAQLDE
LTERYDFLLRQLPVQKELASMLASVNELGLDNALTFTRIDWGEKQNKEFLYRLPLNIELTGNYHDIGDFSEAIAKLPRII
NFDDVDWQRVSQESSTLHFRVRAYTYQFKQEVDDEKQ
MTSFQDLDMDEMAEWPLLPQLLVILVLMLIIQGVGAWFYLMPQNEQLQNLKQQEEVLKSTLRIKASKAATLPQLQAQLDE
LTERYDFLLRQLPVQKELASMLASVNELGLDNALTFTRIDWGEKQNKEFLYRLPLNIELTGNYHDIGDFSEAIAKLPRII
NFDDVDWQRVSQESSTLHFRVRAYTYQFKQEVDDEKQ
Nucleotide
Download Length: 594 bp
>NTDB_id=245879 CMV05_RS13835 WP_013855887.1 2933119..2933712(-) (pilO) [Vibrio anguillarum strain VIB12 isolate Sea bass]
ATGACTAGTTTTCAAGATCTTGATATGGATGAAATGGCTGAATGGCCGTTGCTGCCTCAACTGCTGGTTATTTTGGTGTT
GATGCTGATTATTCAAGGCGTTGGCGCGTGGTTCTACCTGATGCCTCAAAATGAGCAATTGCAGAACTTAAAACAGCAAG
AAGAGGTGTTGAAATCGACCTTACGGATTAAGGCCAGCAAAGCCGCCACCTTACCCCAGTTGCAAGCTCAACTGGATGAA
TTAACTGAACGTTATGATTTTTTATTACGCCAATTACCTGTGCAAAAAGAGCTCGCAAGCATGCTGGCGTCGGTCAATGA
ACTAGGGCTAGATAACGCGTTAACCTTTACACGTATTGATTGGGGAGAAAAACAGAATAAAGAGTTTCTGTATCGTTTGC
CGCTCAATATCGAATTAACTGGGAATTACCACGACATTGGTGATTTCTCCGAGGCGATCGCGAAATTGCCCCGCATTATT
AATTTCGATGATGTTGATTGGCAACGGGTTAGCCAGGAAAGCAGTACGTTACATTTTAGGGTGCGCGCTTATACCTATCA
ATTCAAGCAAGAGGTGGACGATGAAAAACAATAA
ATGACTAGTTTTCAAGATCTTGATATGGATGAAATGGCTGAATGGCCGTTGCTGCCTCAACTGCTGGTTATTTTGGTGTT
GATGCTGATTATTCAAGGCGTTGGCGCGTGGTTCTACCTGATGCCTCAAAATGAGCAATTGCAGAACTTAAAACAGCAAG
AAGAGGTGTTGAAATCGACCTTACGGATTAAGGCCAGCAAAGCCGCCACCTTACCCCAGTTGCAAGCTCAACTGGATGAA
TTAACTGAACGTTATGATTTTTTATTACGCCAATTACCTGTGCAAAAAGAGCTCGCAAGCATGCTGGCGTCGGTCAATGA
ACTAGGGCTAGATAACGCGTTAACCTTTACACGTATTGATTGGGGAGAAAAACAGAATAAAGAGTTTCTGTATCGTTTGC
CGCTCAATATCGAATTAACTGGGAATTACCACGACATTGGTGATTTCTCCGAGGCGATCGCGAAATTGCCCCGCATTATT
AATTTCGATGATGTTGATTGGCAACGGGTTAGCCAGGAAAGCAGTACGTTACATTTTAGGGTGCGCGCTTATACCTATCA
ATTCAAGCAAGAGGTGGACGATGAAAAACAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio cholerae strain A1552 |
80.612 |
99.492 |
0.802 |
| pilO | Vibrio campbellii strain DS40M4 |
70.37 |
95.939 |
0.675 |