Detailed information
Bioinformatically predicted
Overview
| Name | pilP | Type | Machinery gene |
| Locus tag | CMV05_RS13830 | Genome accession | NZ_CP023310 |
| Coordinates | 2932611..2933132 (-) | Length | 173 a.a. |
| NCBI ID | WP_013855888.1 | Uniprot ID | - |
| Organism | Vibrio anguillarum strain VIB12 isolate Sea bass | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2927611..2938132
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CMV05_RS13815 (CMV05_13815) | aroB | 2929051..2930139 (-) | 1089 | WP_081245062.1 | 3-dehydroquinate synthase | - |
| CMV05_RS13820 (CMV05_13820) | aroK | 2930164..2930685 (-) | 522 | WP_010317691.1 | shikimate kinase AroK | - |
| CMV05_RS13825 (CMV05_13825) | pilQ | 2930872..2932587 (-) | 1716 | WP_096036693.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| CMV05_RS13830 (CMV05_13830) | pilP | 2932611..2933132 (-) | 522 | WP_013855888.1 | pilus assembly protein PilP | Machinery gene |
| CMV05_RS13835 (CMV05_13835) | pilO | 2933119..2933712 (-) | 594 | WP_013855887.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| CMV05_RS13840 (CMV05_13840) | pilN | 2933705..2934307 (-) | 603 | WP_081245065.1 | PilN domain-containing protein | Machinery gene |
| CMV05_RS13845 (CMV05_13845) | pilM | 2934297..2935307 (-) | 1011 | WP_081245066.1 | type IV pilus assembly protein PilM | Machinery gene |
| CMV05_RS13850 (CMV05_13850) | - | 2935457..2937955 (+) | 2499 | WP_096036694.1 | PBP1A family penicillin-binding protein | - |
Sequence
Protein
Download Length: 173 a.a. Molecular weight: 19203.29 Da Isoelectric Point: 10.2262
>NTDB_id=245878 CMV05_RS13830 WP_013855888.1 2932611..2933132(-) (pilP) [Vibrio anguillarum strain VIB12 isolate Sea bass]
MKNNNLLLMVLFSTSVLVGCKANQDSLKVYVEQVEGQARKEVSKLKPIIQFEVAHYAQHESREPFVLPKEAIVQNQPVVK
ADCWQPPARSKNGQLERYPLNQLRLKGVMSSGGAVSALVQTPQGKVVNVKAGQYLGLNHGKVTRVNSNYLLINETLPDGL
GCWNQRNVKLALK
MKNNNLLLMVLFSTSVLVGCKANQDSLKVYVEQVEGQARKEVSKLKPIIQFEVAHYAQHESREPFVLPKEAIVQNQPVVK
ADCWQPPARSKNGQLERYPLNQLRLKGVMSSGGAVSALVQTPQGKVVNVKAGQYLGLNHGKVTRVNSNYLLINETLPDGL
GCWNQRNVKLALK
Nucleotide
Download Length: 522 bp
>NTDB_id=245878 CMV05_RS13830 WP_013855888.1 2932611..2933132(-) (pilP) [Vibrio anguillarum strain VIB12 isolate Sea bass]
ATGAAAAACAATAATCTGCTGCTGATGGTGCTGTTTAGTACCAGCGTATTGGTTGGTTGTAAGGCGAATCAAGATTCATT
GAAGGTTTATGTGGAGCAGGTTGAGGGGCAAGCACGCAAAGAAGTCTCCAAATTAAAACCCATTATTCAATTTGAAGTTG
CTCATTATGCGCAACATGAATCCCGCGAACCTTTTGTGCTGCCTAAAGAAGCGATTGTACAAAATCAGCCTGTAGTGAAG
GCAGACTGCTGGCAACCTCCAGCTCGCAGTAAAAATGGCCAGCTAGAGCGCTATCCGCTTAATCAACTGCGATTAAAAGG
CGTGATGAGTAGCGGGGGCGCGGTATCGGCATTAGTGCAAACGCCCCAAGGCAAGGTCGTCAACGTGAAAGCGGGACAAT
ATTTAGGTTTGAATCACGGCAAAGTTACTCGAGTTAATTCCAATTACCTGCTGATCAATGAAACCTTGCCAGACGGCTTA
GGTTGTTGGAATCAACGTAACGTCAAATTGGCTCTGAAATAG
ATGAAAAACAATAATCTGCTGCTGATGGTGCTGTTTAGTACCAGCGTATTGGTTGGTTGTAAGGCGAATCAAGATTCATT
GAAGGTTTATGTGGAGCAGGTTGAGGGGCAAGCACGCAAAGAAGTCTCCAAATTAAAACCCATTATTCAATTTGAAGTTG
CTCATTATGCGCAACATGAATCCCGCGAACCTTTTGTGCTGCCTAAAGAAGCGATTGTACAAAATCAGCCTGTAGTGAAG
GCAGACTGCTGGCAACCTCCAGCTCGCAGTAAAAATGGCCAGCTAGAGCGCTATCCGCTTAATCAACTGCGATTAAAAGG
CGTGATGAGTAGCGGGGGCGCGGTATCGGCATTAGTGCAAACGCCCCAAGGCAAGGTCGTCAACGTGAAAGCGGGACAAT
ATTTAGGTTTGAATCACGGCAAAGTTACTCGAGTTAATTCCAATTACCTGCTGATCAATGAAACCTTGCCAGACGGCTTA
GGTTGTTGGAATCAACGTAACGTCAAATTGGCTCTGAAATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilP | Vibrio cholerae strain A1552 |
76.301 |
100 |
0.763 |
| pilP | Vibrio campbellii strain DS40M4 |
56.647 |
100 |
0.566 |